Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01564 ATGAGTGACATAAGAAAATGGTTCATGAAAACACACGATAAGCCCAAAAATGCCGCCGCCGCCGCCGGTAACTCCTCCAACAAACCCTCCGATCAACCCAAGCCTCCTCCGGCTAAACCCGACCCGGCCAAAACGGTACCTGCTGAAGGTCAAGCAAGTTCAGGCAGAAGGAAAACTAGCAAATACTTTGATACAGATAAGTCAAAGGCGAAAGATGAGGTAGAAACACAAGTGCTACCTGCTAAAAGAAAGACTAATGAAGATAACAGAGATGACTCTGTTCTGCCCACTAATCAAAAGAAGGTTGCTGGTTCCACTCCTGCTAAAAAATTGAAGAGTGGATCGGGTAGGGGAATCCCCCAGAAACCTGTAGATTTGGATGAAAGTGATGAAGAGGATGAGAAAGATGCTGTGACTCCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCAACACCAGCATCTAGTGGAAGGGGCCGAGGGGGTGGTAGGGGAACTGCCCAGAAATCTGCAGCTATGGAAGAAAATGACGAAGATGACGAGAATAATGTTGCGTCTGCTGCTAAATCTGGTGGAAGGGGTCGTGGCGGAAGAGGAGCTTCAGCACAAGCATCTGGTGGGAGGGGCCGAGGGGGTGGTGGTAGGGGTGGATTCATGAACTTCGGTGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGTTTAACGTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCGGAAGATTTGATCAAACGCCATGGTGGCCGTGTCACCGGATCAGTCAGCAAGAAAACAAACTATTTGTTATGTGACGATGATATTGGGGGAAGAAAGTCTGAAAAAGCTAAAGAGCTAGGAACTTCATTCCTCACAGAAGATGGATTGTTCGACATGATTCGGGCATCTAAACCTGCAAAAGCTCCTAAGCAAGAGGAATGCAAGAAATCTGTGACTAAGGCTGTTCCAGTGCCATCTCCATCAAAAGTTCTCCCGAAAGCAGAAACAAAGGCCTCTTTGCCTTCATACTCACCTTCCAACCAAGCCAAGCCTAAGAAAGCTGCTACTGCTCAGTCTAATTTGACGTGGACAGAGAAACATCGACCTAAAAATCCCAAAGATATCATAGGGAATCAGTCACTGGTTGCACAGCTTCGAACTTGGTTGAAAGGTTGGCACGAGCAATTTTCTAACACTGGTGGTAATAAAAAAGGAAAAAAGCAGAATGACCCTGCTTCTAAAAAGGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGCAAAACAACTTCAGCAAAGCTGGTGTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGACAGCAAAATTGAAAAGGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTGACCAACGAGGCCCTTGGTCGTAATATGGATAGGTCAAAGCAGTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGTTACAGTCAGAAACTGAAGAGCCTAATGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTTATGGAGGTTGCTAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGGGATATGCGCATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTACGATGATATTAGGCAGCGGTTACTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGAAAGATGAAAATGGATGAGAGGATTAATCTTAGCATGAGTGACCCTGATCTTGTTCCTCTACTTATCCAGGAAAATTATATTAATTATAGACCAAGCTCGGCTGGTAAGGATGACAATGGTGTAAAGCGCATGAATCTGATTGCCCGTGCTGCCGAGTCTATTGCTACTGGAGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGTATACTTCCTGCTTCATTGCTACATGGGAGTAGGGAAATACTTGAACAGGGAGAACGGAATTTCAACCGATTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACATGAGGCTTATGGATGACCTGCATGTTCACATTCTTGCATCTCGCGAATCTAGTTCGGGAAGGGATACTATTCGCCTGGAATACCTTACTACTCTTCTTAAGAACTTGACAGAACCCCTCCGAGTTTTGCCTAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAACACATATTCAATCAGTCAGGAAGATTTTGACACTATAGTAGAGTTATCGAAATTCAAGGGTCGTCCTAATCCGCTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCTAAGCAAAACTCGGACTGTTAGAGCTGCGGATCTAATTACTCTTCCTGGAATAAAAAAGGCACCCAAGAAGCGGATTGCTGCTATTTTAGAACCAGCTGATGAAGGAGTGGAACAGGGTGATGGTGGCAACACTTTGGATGAGAGTGAAGAAGAGAACACCTCTGACGTAGATGAGTCAGAAGGTGCCGCAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAATTCAAAGGGCGTGCAAGTACAATTGGAATTGAAGGGATCGGGAAGTTCCAAGAAGGTATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGCGCAGAAGGGTGCTCAAACGTCAAAGACTCCTGCAAAAAGAAAAAGGTGA 2985 0.4482 MSDIRKWFMKTHDKPKNAAAAAGNSSNKPSDQPKPPPAKPDPAKTVPAEGQASSGRRKTSKYFDTDKSKAKDEVETQVLPAKRKTNEDNRDDSVLPTNQKKVAGSTPAKKLKSGSGRGIPQKPVDLDESDEEDEKDAVTPIKSGGRGRGGRGASTPASSGRGRGGGRGTAQKSAAMEENDEDDENNVASAAKSGGRGRGGRGASAQASGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDDDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPKQEECKKSVTKAVPVPSPSKVLPKAETKASLPSYSPSNQAKPKKAATAQSNLTWTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQNDPASKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDDNGVKRMNLIARAAESIATGDIVNVQIRRYRQWQLSQTSSVASCILPASLLHGSREILEQGERNFNRFGGWLGKNSTMGKNMRLMDDLHVHILASRESSSGRDTIRLEYLTTLLKNLTEPLRVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGRPNPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRIAAILEPADEGVEQGDGGNTLDESEEENTSDVDESEGAATGEKLKSELQSLNSKGVQVQLELKGSGSSKKVSGGRGKGASASAQKGAQTSKTPAKRKR 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01564 994 SUPERFAMILY BRCT domain 241 322 IPR036420 -
Mepo2g01564 994 CDD BRCT_RFC1 241 319 - -
Mepo2g01564 994 Gene3D BRCT domain 218 320 IPR036420 -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 225 239 - -
Mepo2g01564 994 Pfam BRCA1 C Terminus (BRCT) domain 243 318 IPR001357 -
Mepo2g01564 994 SUPERFAMILY post-AAA+ oligomerization domain-like 639 784 IPR008921 GO:0003677|GO:0006260
Mepo2g01564 994 MobiDBLite consensus disorder prediction 357 383 - -
Mepo2g01564 994 Gene3D - 379 567 IPR027417 -
Mepo2g01564 994 SMART BRCT_7 243 321 IPR001357 -
Mepo2g01564 994 FunFam Replication factor C subunit 1 640 749 - -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 1 244 - -
Mepo2g01564 994 CDD HLD_clamp_RFC 568 626 - -
Mepo2g01564 994 Gene3D - 640 749 - -
Mepo2g01564 994 CDD AAA 430 531 - -
Mepo2g01564 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 628 IPR027417 -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 941 962 - -
Mepo2g01564 994 FunFam Replication factor C subunit 1 217 320 - -
Mepo2g01564 994 ProSiteProfiles BRCT domain profile. 241 322 IPR001357 -
Mepo2g01564 994 SMART AAA_5 431 569 IPR003593 GO:0016887
Mepo2g01564 994 PIRSF RFC1 1 970 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Mepo2g01564 994 Gene3D - 568 638 - -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 901 994 - -
Mepo2g01564 994 FunFam Replication factor C subunit 1 379 567 - -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 59 95 - -
Mepo2g01564 994 Pfam ATPase family associated with various cellular activities (AAA) 435 535 IPR003959 GO:0005524|GO:0016887
Mepo2g01564 994 FunFam Replication factor C subunit 1 568 639 - -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 322 395 - -
Mepo2g01564 994 MobiDBLite consensus disorder prediction 915 929 - -
Mepo2g01564 994 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 974 - -
Mepo2g01564 994 Pfam Replication factor RFC1 C terminal domain 708 870 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01564 1 951 Core DNA Replication Machinery Family AT5G22010 63.872 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01564 K10754 - gmx:100790070 1337.01