Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01548 ATGGCAAAAGAACCTTCAAAACCTCCCTCCGCTGCAGATACCTCCACTGTTGAAAGCCTATCGTTCAAAGCATTAATTATCGATGAGAACAAAAGTTCTCCCAACTTGCTCGGTGGTCCTAATGACTCTAACAATGAAACGGAGGTTAACTCGGGGTACTCTCCGTACACATCTGCAGCAACATTTGAAGAGCTTTCCCTCTCACCGGAGCTACTGAAGGGACTCTATGTGGAGATGGGGTTTAAAAAGCCTAGCAAAATTCAAGAAATAACCTTGCCGATGATTCTTAACCCTCCACATAAGGATTTGATTGCACAGGCACGTAATGGTTCTGGTAAAACCACTTGTTTCGTGCTTGGAATGCTCAGTCGTGTTGATCCAAACATGAAGGCTCCTCAAGCTCTCTGCATTTGCCCTACTAGAGAGTTAGCTATTCAGAACAATGAGGTTCTCCAAAAGATGGGAAAGTACACGGGCATTAGTTCGGAACTTGCAATTCCTAGCATGGACAAAATTCCACCATCGAGACGGCCACCGATTATGGCTCAGGTGGTTATTGGTACTCCTGGCACAATTAATAGCTTGAAGAATCATAAGAATCTCGGGTTGATGAGATTGAAGATTCTCGTTTTTGACGAGGCTGATCAAATGCTTGCTCAGGATGGATTTAAAGATGATTCTCTAAGGATAATAAAAGAAATAGAAAAATTCAATTCAAACTGTCAGATCGATATGGCGAGTACTTCAATGGTGGAAAAGTTTCAACTTTCGGTTCTTGAGCATCACTGTCCATATATACTTGATAGCCTTGAAGATTCGGAATTTGGTGATATGGGTAATATGATGGTGACCAACGATTGGCTTGTGTTTCTGCAGGTTCTTCTGTTTTCTGCTACATTTGATGACACTGTCAAGAATTTCACTACAAGGATTGTTGCGAAGAAGGAGTATAATGAATATTTTGTGAAGAAAGAGGAGCTATCTTTAGAAGCAGTGAAGCAGTACAAAGTGCAATGTACCGATGAACTCGCTAAGATTGAAGTGATTAAAGATTATATATTCGAATTAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCTCTAGAAATAGTGCAAAAATGTTGCACAAAGCTCTTGTTGATTTTGGCTATGAGGTTACTTCCATACAAGGTGCTCTTCAAACTGAAGAGAGAGACATAATCGTCAAGGAATTCAAAGATGGTTTGACTCAAGTTCTTATCTCAACCGACGTTCTTTCCCGTGGCTTTGATCAGGATCAGGTCAATTTGGTTATCAACTATGATCTTCCCCTCAAGTACACTCGTGCCCGTGAACCTGAGCCTGATTGTGAGGTGTATTTGCACAGGGTTGGAAGGGCTGGGAGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGCCATGAAAGTGAGCAAATGGTCATGTCAAAGATTGAAGAACATTTTGGCATCCATGTAGAAGAGGTGCGAGAAAAAAGTGTTGAAGACTATAAAAATGCTCTTAAGAAAGCTGGTTTACTTTACTGA 1551 0.4126 MAKEPSKPPSAADTSTVESLSFKALIIDENKSSPNLLGGPNDSNNETEVNSGYSPYTSAATFEELSLSPELLKGLYVEMGFKKPSKIQEITLPMILNPPHKDLIAQARNGSGKTTCFVLGMLSRVDPNMKAPQALCICPTRELAIQNNEVLQKMGKYTGISSELAIPSMDKIPPSRRPPIMAQVVIGTPGTINSLKNHKNLGLMRLKILVFDEADQMLAQDGFKDDSLRIIKEIEKFNSNCQIDMASTSMVEKFQLSVLEHHCPYILDSLEDSEFGDMGNMMVTNDWLVFLQVLLFSATFDDTVKNFTTRIVAKKEYNEYFVKKEELSLEAVKQYKVQCTDELAKIEVIKDYIFELGENVGQTIIFVRSRNSAKMLHKALVDFGYEVTSIQGALQTEERDIIVKEFKDGLTQVLISTDVLSRGFDQDQVNLVINYDLPLKYTRAREPEPDCEVYLHRVGRAGRFGRKGAVFNLICHESEQMVMSKIEEHFGIHVEEVREKSVEDYKNALKKAGLLY 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01548 516 CDD SF2_C_DEAD 332 474 - -
Mepo2g01548 516 Gene3D - 324 513 IPR027417 -
Mepo2g01548 516 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 484 - -
Mepo2g01548 516 Gene3D - 40 320 IPR027417 -
Mepo2g01548 516 Pfam DEAD/DEAH box helicase 86 306 IPR011545 GO:0003676|GO:0005524
Mepo2g01548 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 318 IPR014001 -
Mepo2g01548 516 MobiDBLite consensus disorder prediction 34 52 - -
Mepo2g01548 516 MobiDBLite consensus disorder prediction 31 52 - -
Mepo2g01548 516 CDD DEADc_DDX19_DDX25 67 312 - -
Mepo2g01548 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 484 IPR027417 -
Mepo2g01548 516 Pfam Helicase conserved C-terminal domain 345 465 IPR001650 -
Mepo2g01548 516 SMART helicmild6 374 465 IPR001650 -
Mepo2g01548 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 60 89 IPR014014 GO:0003724
Mepo2g01548 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 506 IPR001650 -
Mepo2g01548 516 SMART ultradead3 80 335 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01548 Mepo-Chr2 23127897 23132413 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01548 53 497 Eukaryotic Initiation Factors Gene Family AT1G72730 30.942 3.23e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01548 K18655 - gmx:100778091 601.668