Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01534 ATGGAACTTCGTTCTCGTCGACAACGCGATTCCGATGAAATCGATTCTGCGGCTGATAAGGGGAAGCAGCCGATGGAGGATATTGATGAAAAGTTTGACTTTAATACAGATGAAGATGATCATGTCGCGTCTGTGAAATCCGATTCTGATTATGAAGCTGAAGACGTTGGTGGAGAGTTCCCCTTTGACTTGAATCGAGACCCAACTATAATTATTAGTGATTCTGATGGAGAAGATAATACTTCTGATTCATCTGACTTTAGCGGGCCTTCATCTAAACGGAGAAAGACACGGTCCAGAAAGAGAGGCAGTAAATCCAAGATAGAATCTGCAGACCTGAGTGGTGTAGAGAGAGCGCTGGAGTTCGACATGAGTGGTGTAGAGAGAGCGCTGCTGGAGTTCGATGATGAGTTATTTCCAATGGTTTATGCTGAAGAGGCTCCATTTGATTTACCTTTACCTAAGCTGCCAAGGAAGAAAAAAGCAAAGAAGACAAAAAAGGGAGATCCTAAACCAGTGTTGTTATGGCATGCTTGGAAACAGGAACATGAGAAGTGGATCGATCAGAATTTGTTGGAAGATGTTGCCCTTGATCAGAGTGAAGTGATGAATGAGACGGCCGAGGCATCCTCAGATCTGATTGTTCCTTTGCTGAGGTACCAAAGGGAATGGTTAGCATGGGCTTTGAAGCAGGAGGCTTCTGTAACTAGAGGAGGAATCCTTGCTGATGAAATGGGTATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGGGAATTGCAGCAAATGAGCTGTGAACCATTTGAACACTCAGATTCGCCCGGGTCATCTAAAGTCCTTCCTGTGATCAAAGGAACACTTGTCATTTGTCCCGTGGTTGCTGTCACTCAATGGGTTAGTGAGATTGCTCGATTTACTTTGAAAGGAAGCGCGAAGGTTCTGGTTTATCATGGGCCAAAGAGATGGAAGAGTGCTGAGAAGTTCTCGGAATATGATTTTGTAATAACAACATATTCTACCGTGGAATCGGAGTACAGAAAGCATGTGATGCCTCCTAAGGAGAAGTGCCAATATTGTGGAAGATTATTTCACCCGCCTAGTTTAGTTTTTCACCAGAAGTACTATTGTGGGCCTGACGCTATTAGAACAACAAAACAAGCAAAGCAAACCAAGAAAAAGAAAGGAGGTCAGAGTTCAAAGTTGGATGGAGAGTTGGAACAGGGCTCTATCAAGAAGAAGGAAGAGGATCTAGAAGGCAATGACAAGTCATTTCTCCATGCTGTGAAGTGGCAAAGGATCATATTGGATGAGGCACACTTTATAAAATCTAGGCATTCTAACACTGCAAAAGCAGTTCTTGCCTTAGAGTCTTTCTACAAATGGGCATTAAGTGGCACACCCCTTCAGAATCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCCTATTCCTATAACCTGTGCAAGGACTGTGATTGCAGGACACTTGATCATAGCTCCTCTAAAGTATGTTCAAACTGCTCCCACAGTTCTGTTAGGCATTTTTGTTGGTGGAACAAGAATATTGCCACACCAATTCAATCATCCGGATATGGTGATGATGGGAAAAGAGCTATGATTTTGCTCAAAAACAAACTTTTAAAGAGCATAGTCTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCGCCTAGGATCGTTTCATTGAGGAGGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCACTATACAATGAAAGTCAGGCCCAATTTAATACGTATGTTGAGGAAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTAGTGTATTCTCCAACTGCAGCAGCACCAAAAGGTGGGAACTTGGCTAGTAATGGTGATGTTGAACAAGAATGTGGCATTTGTCATGATACTGTTGAAGATCCAGTGATTACTTCTTGTGAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCCTTAGGACAAGTATCATGCCCCTCATGCTCTAAATTACTCACTGTTGATTTGACTTCCAACAAGGATGCCGTGGTTGATAAAACAACAATTAAGGGTTTCAGATCTTCAAGCATTTTAAACAGGATTCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCAAAGGCGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATCAACTACTCCCTGCAGAAGTCAGGTGTATCTTGCGTTCAATTGGTTGGAAGTATGACATTGACTGCTCGGGATAATGCCATTAAGAAATTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAAGCCGGAGGCGTTGCTCTGAATTTGACTGTAGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAGTACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATTGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTGGTATTTGAAGGGACTGTAGGCGGTTCTTCAGAGGCTCTAGGGAAGTTGACGGTAGCCGACTTGAAATTTCTCTTTGTTACTTAA 2739 0.4217 MELRSRRQRDSDEIDSAADKGKQPMEDIDEKFDFNTDEDDHVASVKSDSDYEAEDVGGEFPFDLNRDPTIIISDSDGEDNTSDSSDFSGPSSKRRKTRSRKRGSKSKIESADLSGVERALEFDMSGVERALLEFDDELFPMVYAEEAPFDLPLPKLPRKKKAKKTKKGDPKPVLLWHAWKQEHEKWIDQNLLEDVALDQSEVMNETAEASSDLIVPLLRYQREWLAWALKQEASVTRGGILADEMGMGKTIQAIALVLAKRELQQMSCEPFEHSDSPGSSKVLPVIKGTLVICPVVAVTQWVSEIARFTLKGSAKVLVYHGPKRWKSAEKFSEYDFVITTYSTVESEYRKHVMPPKEKCQYCGRLFHPPSLVFHQKYYCGPDAIRTTKQAKQTKKKKGGQSSKLDGELEQGSIKKKEEDLEGNDKSFLHAVKWQRIILDEAHFIKSRHSNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRTLDHSSSKVCSNCSHSSVRHFCWWNKNIATPIQSSGYGDDGKRAMILLKNKLLKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAAPKGGNLASNGDVEQECGICHDTVEDPVITSCEHTFCKGCLIDFSASLGQVSCPSCSKLLTVDLTSNKDAVVDKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLTARDNAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTVADLKFLFVT 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01534 912 SMART ring_2 660 699 IPR001841 -
Mepo2g01534 912 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 725 IPR013083 -
Mepo2g01534 912 Coils Coil 729 749 - -
Mepo2g01534 912 ProSiteProfiles Zinc finger RING-type profile. 660 700 IPR001841 -
Mepo2g01534 912 CDD DEXDc_SHPRH-like 217 561 - -
Mepo2g01534 912 Gene3D - 369 575 IPR038718 -
Mepo2g01534 912 MobiDBLite consensus disorder prediction 1 53 - -
Mepo2g01534 912 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 52 910 - -
Mepo2g01534 912 SMART helicmild6 773 856 IPR001650 -
Mepo2g01534 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 488 IPR014001 -
Mepo2g01534 912 Pfam Helicase conserved C-terminal domain 742 856 IPR001650 -
Mepo2g01534 912 CDD SF2_C_SNF 740 867 - -
Mepo2g01534 912 Pfam Zinc finger, C3HC4 type (RING finger) 659 699 - -
Mepo2g01534 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 910 IPR027417 -
Mepo2g01534 912 MobiDBLite consensus disorder prediction 1 110 - -
Mepo2g01534 912 Pfam SNF2-related domain 233 636 IPR000330 GO:0005524|GO:0140658
Mepo2g01534 912 Gene3D - 219 362 IPR038718 -
Mepo2g01534 912 MobiDBLite consensus disorder prediction 390 410 - -
Mepo2g01534 912 MobiDBLite consensus disorder prediction 74 88 - -
Mepo2g01534 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 902 IPR001650 -
Mepo2g01534 912 ProSitePatterns Zinc finger RING-type signature. 675 684 IPR017907 -
Mepo2g01534 912 Gene3D - 576 907 IPR027417 -
Mepo2g01534 912 SMART ultradead3 213 506 IPR014001 -
Mepo2g01534 912 SUPERFAMILY RING/U-box 657 704 - -
Mepo2g01534 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 561 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01534 Mepo-Chr2 22911927 22920450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01534 150 912 RAD5 or RAD16-like Gene Family AT1G05120 66.117 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo2g01534 SNF2_N 1.1e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01534 K15083 - gmx:100798333 1200.27