Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01290 ATGGGTCGTGCAAATTTTTTTATGGAGCTCATTCAAAAGGAAACATCAAGAAAGGCAACACTTCAAAAGAGAAAGAATGGCTTAATGAAAAAAGTGAATAAATTTTCTGTTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGAAGGGCAAGGATTTGCTAAACGTGAAGTATGGCCAAAAGACACAAAAGAGAGTGCAGAAATAGATGTTGAAGATCAGTTATTTGCTAGCTTATTAGATGATAAGCTTGATGCTTGTATTCAAAAGATGAATATGCTTAAAGGATATCATAAGGGAAAAGCAATAGCTCATGAATCACACAAGGTTGATAAACATATTAGTACTCCTCACTTGGCCTCAAATCCAAGTAATTGCTTCAATCTCATGCAAAACATGCCTCAAGCAGAAATTTACCCTCCATTGATTAATATTAGTGATGAAACCCACTCAAGGTTTTGGCGACTTCAATTGGGACAAAGCTCCCAGCCTTGTTCTATGGTTTCGAGTGCACAAAGGTCTTACCCGGTGGTGTCCGAGGAGGGCAGATATGCGCAATCTTACTAG 579 0.38 MGRANFFMELIQKETSRKATLQKRKNGLMKKVNKFSVLCDVDVCVVLYAPNFEGQGFAKREVWPKDTKESAEIDVEDQLFASLLDDKLDACIQKMNMLKGYHKGKAIAHESHKVDKHISTPHLASNPSNCFNLMQNMPQAEIYPPLINISDETHSRFWRLQLGQSSQPCSMVSSAQRSYPVVSEEGRYAQSY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01290 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mepo2g01290 192 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo2g01290 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g01290 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g01290 192 SUPERFAMILY SRF-like 1 55 IPR036879 GO:0003677|GO:0046983
Mepo2g01290 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo2g01290 192 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Mepo2g01290 192 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 88 - -
Mepo2g01290 192 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01290 Mepo-Chr2 18068279 18068929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01290 1 73 Type I MADS-box Gene Family AT5G55690 43.243 4.41e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo2g01290 SRF-TF 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01290 - - tpra:123913303 209.534