Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01116 ATGGAGGCTCTCGATTCCAATCCACAACACCAATCCGAAACCCTAATCCCCCAAAACGGCATCAACGGCACCGATAACAACGATTCACGTCCACCGATTCCAAATCCACTTCTCTCCGAAAACGGTTTAACCAACGGCAACACCCGAAGCGGAACCGACAAAGATCAATCAGGCGGAGAAGAAGAAACAACAAGCAAACGCCGCCGTAGAAGCCGATGGGACCCACAACCAGATTCAAACGATCAGAACGGCGAAGCCGGCACCGGGACGAAGAAAAGGAAATCCAGATGGGCGGATGATGAACCGAAACCGGTAATTCAACTTCCTGATTTCATGGGTGGTATTGAATTTGATCCTGAAATTCAAACATTGAATAGTAGATTGCTTGAGATTAGTAGAATGTTGCAATCTGGTTTACCTTTAGATGATCGTCCTGAAGGGGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGTATTAGGATTAATACTAGAGAATATCGTGCTCGTGAGAGGTTTCAGAAAGAGAGACAAGAGATTATTTCTCAGATTATTAAGAAAAATCCTGCTTTTAAGCCACCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAGTATCCTGGTTATAATTTTATTGGGCTTATTATTGGGCCTAGGGGGAATACTCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTGATTCGGGGTAAAGGGTCGGTGAAAGAAGGTAGGTTGCAGCAGAAGAGGGATTTGAAACCGGATCCGTCGGAGAATGAGGATTTGCATGTTTTGGTTGAGGCAGATACAGCTGATGCGCTTGAGGCTGCGGCTGGTATGGTGGAGAAGCTATTGCAGCCTGTTGATGAGGTTTTGAATGAGCATAAGAGGCAGCAACTTAGAGAGCTTGCGGCTTTGAATGGGACGATTAGGGATGAAGAGTATTGTAGGTTGTGTGGTGAGCCTGGGCATCGTCAGTATGCGTGTCCTACGAGGACTTCGACGTTTAAGAGTGAGGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGTATTGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGACGAGTACCAGAATTTCTTGGCTGAGTTGGGTGGTACAGTTCCTGAATCTGCGATTAAGACAACTAGTACTTTGGCGATTGGTTCCGGCAGTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCGGCTGGTGGTACACCACAAGCTGGATTAGGGGCCGGTGCGGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGAGGATGATGGCTTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATTAAGGATCGAATGACAGGTTTGAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTTGCCATGAATGGCTATCGCCTTGAGGGTCGAACTATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCAGGCCCACCTGCGTCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCAATTGGTGCCTATCCATCCCAACAATACACCGGCGGCGGTCCCATTGGGAGTGCTCCTCCTGGGAGTTATGGAGGTACTCCTGTCCCATGGGGACCTCCTATTCCTCCTCCATACAATCCTTATGCTCCTCCCCCGCCTGGATCAACTATGTATCCTCCTATGCATGGTCAACCTATGCCTCCTTATGGTGTTCAATACCCACCCATGCCGACAGGTCCCCCTGGTGCCACTCCCCCACCCCCGGCTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGGGTGCAGTCTGATAATAATTCATCTACTCAGTCTGTACCGACCAACATGTATGGGAACGCAATGCCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTCCTGCCCCTACTTCAGACCAATCACACAGCATTGCAAATGCGCCTTGGGCCAGTAATCATTCCGCCCCTCCTCCTCCTTCGTCTGCAGATCAATCCCAAAGCATTGGAAATGTGCCTCCACCTATGCCTCCTCCTAACTCATCGGCGGAAAAGACGTCATATGGAGCTGATTCTGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2274 0.4771 MEALDSNPQHQSETLIPQNGINGTDNNDSRPPIPNPLLSENGLTNGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQNGEAGTGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQTLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERFQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKTTSTLAIGSGSSGSNPPWANNSGSAGGTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPIGAYPSQQYTGGGPIGSAPPGSYGGTPVPWGPPIPPPYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATPPPPASGEMQQNYPPGVQSDNNSSTQSVPTNMYGNAMPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPPAPTSDQSHSIANAPWASNHSAPPPPSSADQSQSIGNVPPPMPPPNSSAEKTSYGADSEYEKFMAEMK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01116 757 MobiDBLite consensus disorder prediction 695 725 - -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 605 757 - -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 605 629 - -
Mepo2g01116 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 443 512 IPR000504 GO:0003723
Mepo2g01116 757 MobiDBLite consensus disorder prediction 552 571 - -
Mepo2g01116 757 ProSiteProfiles Zinc finger CCHC-type profile. 326 340 IPR001878 GO:0003676|GO:0008270
Mepo2g01116 757 Gene3D K Homology domain, type 1 196 324 IPR036612 GO:0003723
Mepo2g01116 757 FunFam splicing factor 1 324 377 - -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 1 53 - -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 87 103 - -
Mepo2g01116 757 SUPERFAMILY RNA-binding domain, RBD 437 529 IPR035979 GO:0003676
Mepo2g01116 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 441 519 IPR000504 GO:0003723
Mepo2g01116 757 MobiDBLite consensus disorder prediction 401 424 - -
Mepo2g01116 757 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 204 330 IPR036612 GO:0003723
Mepo2g01116 757 SMART kh_6 204 296 IPR004087 GO:0003676
Mepo2g01116 757 MobiDBLite consensus disorder prediction 659 694 - -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 401 429 - -
Mepo2g01116 757 FunFam splicing factor-like protein 1 196 324 - -
Mepo2g01116 757 SMART c2hcfinal6 351 367 IPR001878 GO:0003676|GO:0008270
Mepo2g01116 757 SMART c2hcfinal6 325 341 IPR001878 GO:0003676|GO:0008270
Mepo2g01116 757 MobiDBLite consensus disorder prediction 631 654 - -
Mepo2g01116 757 FunFam splicing factor-like protein 1 421 523 - -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 54 76 - -
Mepo2g01116 757 Gene3D - 417 523 IPR012677 -
Mepo2g01116 757 MobiDBLite consensus disorder prediction 1 105 - -
Mepo2g01116 757 Gene3D - 118 195 IPR047086 -
Mepo2g01116 757 SUPERFAMILY Retrovirus zinc finger-like domains 322 368 IPR036875 GO:0003676|GO:0008270
Mepo2g01116 757 Gene3D - 325 377 - -
Mepo2g01116 757 CDD KH-I_BBP 203 296 - -
Mepo2g01116 757 ProSiteProfiles Zinc finger CCHC-type profile. 352 366 IPR001878 GO:0003676|GO:0008270
Mepo2g01116 757 ProSiteProfiles Type-1 KH domain profile. 219 291 - -
Mepo2g01116 757 PANTHER RNA-BINDING PROTEIN RELATED 55 565 IPR045071 -
Mepo2g01116 757 Pfam Splicing factor 1 helix-hairpin domain 93 200 IPR032570 -
Mepo2g01116 757 Pfam KH domain 219 267 IPR004088 GO:0003723
Mepo2g01116 757 SMART rrm1_1 442 515 IPR000504 GO:0003723
Mepo2g01116 757 MobiDBLite consensus disorder prediction 249 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01116 Mepo-Chr2 14964726 14968847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01116 441 647 Eukaryotic Initiation Factors Gene Family AT3G16380 25.234 4.11e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01116 K13095 - gmx:100800982 1091.26