Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01051 ATGGTTATGAACGAAAGACCCACTAAGAGAGTCAAAAGAAGAGTCACAGCCGATCTTTACGATTTTCTCTCATTCCCAACCGCCGGAGATGATTCCGCCGCCGCTGTACCGTTCAGGAAAGGTGTTTACCGGTTTCTGTCTGATCATGCAAGGTCTGCTTTTCCTCCTGAGCTTTTTCCGTCTCTGATGACGTGGCAGATCTTGTTCCGTGTTGGAGAGGTTGGTGATGGAGGTGATGTTTCGTCTGGTTTGGTTACTCTTGACATTGTTGAAGAGGATGTTACAAGGTCGAGGACGATTTATTGTGATCAATGTCGTGTTGTTGGATGGAGTGCTCATCCTGTATGTCGAAAGCGATATCACTTCATAATAAGGTCTGCAACTGGTGCCAATGAAGCATACCAAAGACCTTGCACTAAATGTGGAACTCCTCTCCAATTATCTGAAGCAAGGTGTAACTCTTGTAATTTTGACATTTCTGCTGATGATCTTGAGGAATGGTTGTATCATCAACTTGAAGAAAACAACACACATCTTCTGCATGGTGTTGTACATGCTAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGTCGCTTCTCTCTGGATCTGATATTATGGGTTTCTGGGATAGGCTTTGTGCTGCTATGTCTGTTAGGAAGGTTACTGTGATGGATTTGTCCAAGAAATTTGGACTGGATTATCGCTTGCTTCATGCAATTGCCAGAGGGCATTCATGGTATGGTAATTGGGGTTATAAATTTGGGACTGGCTGCTATGCTCTTACCGAAGATGCATACAAGATGGCAGTAGATAACTTGTGCAATATGCCCTTGTCCTCATTATCGTTCCAGGATCGAGGACCTCATAACCCCATACAGTCTGTTATTTCTTTTTACCAGTCTTTGGCTGAAACTGAACTTCGCACAATGAAAGATCTCTTCTCCTTTTTGTTGGTATTGGTTCAAAATTTTCGTAAGCCCAAGAGCGCAGAGACTACTAAACAGCATGAGCAGACCACTCCCTGTAATTTATTATGTTCATGGACGAGAAACGACGTCGAAGATGTGCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGGTGCCTGTAATGAGGCCAAATGGGTGACAAGGCAAACTCTTAAAGGGGCAGTGGGTAGGCGTATTGGATCTCCAGAGCTTGTTGACTTTGGTCTTAAGCACTTGCAAGGAAAATCAGTTGCAAATGGAATGGTAGTTTGTTCTCGATGCAATCCCACATCTAGTGCTATTGAATTCAGATTGGGTCATGTGCCTAATGGATTAAGCTCCATTGCAAGCCATCCTTCCAAAGAGCAAGTGATTTCTGATTTGACATTCTTATTTAATTCAATTGTTCACCCTGAAAAAATGATCAAATATAGACCAAAGATTAATAGGAAAACAGTGGCTGATTCAGCTAGAAAGCTTCTTGACTGTAAGCAATTTATGAAGGATTACAAAATTGAGCAAATGACCACAGACCTGTCTTCAGGTCTTAAGATCTGGTGTCACGTGAAGCTCTCTGACCATCCTAAAGAAGACCCACCATCACCACCGCCAGAGTTAATTGTGCTGCCTTTGAATGCTACTAATGTTGACCTTTTGAATGAAGTCACTAGTGTTTTTCAAGAGGTATATGCAATGTACAAGAAGTTTGTTGCTGTGAAACTTCTGGGATATGGTTTAACCCGAGAACGTGAGTACACCCTAAAATTCCTTCTGGGATCAACCTATGGATCAGTTGAAGTTCAAGGAGAATGCCCAGCTAAAAATGGCTTAAACCGATTCCGAATGGAACGAGGAACAGAAGAATGGAAAGTTGATTGCATTTGTGGTACTAAGGATGATGACGGAGAAAGGATGTTAGCATGTGATACCTGTGGTGTCTGGTTGCATACCAGATGTGCTGGAATTGACAGTGCTGATGGGATGCCTTCCAAGTTTGTATGTAAGAGATGTGTTAACTCAATCCGTGTGGGAGATAACCAGGCTTGTATAGTAAATACTTATTGCAGAGATGAAGCAGTGGCTACATATTCTGCACCTGTTAGTTGTAATATAAAAAATGTGAATTTTGGTGTACGTTGA 2124 0.4214 MVMNERPTKRVKRRVTADLYDFLSFPTAGDDSAAAVPFRKGVYRFLSDHARSAFPPELFPSLMTWQILFRVGEVGDGGDVSSGLVTLDIVEEDVTRSRTIYCDQCRVVGWSAHPVCRKRYHFIIRSATGANEAYQRPCTKCGTPLQLSEARCNSCNFDISADDLEEWLYHQLEENNTHLLHGVVHANGYGHLLTLNGREGGSSLLSGSDIMGFWDRLCAAMSVRKVTVMDLSKKFGLDYRLLHAIARGHSWYGNWGYKFGTGCYALTEDAYKMAVDNLCNMPLSSLSFQDRGPHNPIQSVISFYQSLAETELRTMKDLFSFLLVLVQNFRKPKSAETTKQHEQTTPCNLLCSWTRNDVEDVQQALIKVLLASGACNEAKWVTRQTLKGAVGRRIGSPELVDFGLKHLQGKSVANGMVVCSRCNPTSSAIEFRLGHVPNGLSSIASHPSKEQVISDLTFLFNSIVHPEKMIKYRPKINRKTVADSARKLLDCKQFMKDYKIEQMTTDLSSGLKIWCHVKLSDHPKEDPPSPPPELIVLPLNATNVDLLNEVTSVFQEVYAMYKKFVAVKLLGYGLTREREYTLKFLLGSTYGSVEVQGECPAKNGLNRFRMERGTEEWKVDCICGTKDDDGERMLACDTCGVWLHTRCAGIDSADGMPSKFVCKRCVNSIRVGDNQACIVNTYCRDEAVATYSAPVSCNIKNVNFGVR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01051 707 CDD PHD_MMD1_like 620 665 - -
Mepo2g01051 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 671 - -
Mepo2g01051 707 SUPERFAMILY FYVE/PHD zinc finger 611 668 IPR011011 -
Mepo2g01051 707 Pfam PHD-finger 621 667 IPR019787 -
Mepo2g01051 707 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Mepo2g01051 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 670 IPR013083 -
Mepo2g01051 707 ProSiteProfiles Zinc finger PHD-type profile. 618 668 IPR019787 -
Mepo2g01051 707 SMART PHD_3 620 666 IPR001965 -
Mepo2g01051 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 181 191 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01051 Mepo-Chr2 13755238 13758391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01051 85 665 PHD Transcription Factor Family AT5G22260 29.935 3.75e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo2g01051 PHD 5.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01051 K26271 - gmx:100780558 961.059