Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00965 ATGGCTAGGAAAAAGATGAAACTTGCTTTCATTGTCAATGATGCATCTAGGAAAGCAACATACAATAACAGGTGGAAGGGTCTACTGAAGAAGGTTTATGAACTAAGCACTCTGTGTGGAGTTGAAGCCTGTGCCATAGTCTATGGACCCTACAAGCCCAAACCAGAGATATGGCCATCATCAGAAGGAGTCCAAACAGTGCTCTCCAAATTCAGAACAATGTCTGAAAGGGATAAGAGCAAGAAAATGGTGAATCAAGAGACATATATGAAAGAAAGTGTTCTAAAGGCCAAAGAGAAACTAAAGATACGAAGGCATGACAACAAGGAGAAAGAGATGGAAATGCTCATATTTCAATGTCTTTATGAAGGTAACTTTATGCAGAGTAATATGTCATTGGTTGATTCAAAACATCTTTGTTGGTTGATTGACCAGAAATTGAAGAAGGTTGGTAGAAGGTTGGAAGAAGAGGATAATAATGGTCAACATGAAATTCAATTCCAAATGGCACCACCATTGACATCCAGGAATGAGGAAATGGCAAGGATGGGTCATGGCCATGCTGGGATGACCATGAATAATGGTGACAACATTGAAAGTCAATTGTTGATGGGCTCGATGATGAATGGTAATGGAGATGAGACAGTGCCATTTGGCGAGGTCGATCCTAGATTTTTGCCCAATATACTGCCTTGA 696 0.4023 MARKKMKLAFIVNDASRKATYNNRWKGLLKKVYELSTLCGVEACAIVYGPYKPKPEIWPSSEGVQTVLSKFRTMSERDKSKKMVNQETYMKESVLKAKEKLKIRRHDNKEKEMEMLIFQCLYEGNFMQSNMSLVDSKHLCWLIDQKLKKVGRRLEEEDNNGQHEIQFQMAPPLTSRNEEMARMGHGHAGMTMNNGDNIESQLLMGSMMNGNGDETVPFGEVDPRFLPNILP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00965 231 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mepo2g00965 231 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mepo2g00965 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g00965 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g00965 231 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mepo2g00965 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mepo2g00965 231 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Mepo2g00965 231 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo2g00965 231 PANTHER MADS BOX PROTEIN 3 132 - -
Mepo2g00965 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00965 Mepo-Chr2 12536357 12539695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00965 1 161 Type I MADS-box Gene Family AT5G48670 53.416 5.23e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo2g00965 SRF-TF 7.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00965 - - mtr:11434260 437.958