Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00874 ATGCCTCTTCGTAATCAAACAAAACACAACAAACAAATCGGTAAATCTCATCACCGCCGCTTCAACAAACAACAACCCGTTTCTTCCTCATCATCCATTTCCACGGAGCCTTTGGATCATCAAACTAGTACATCAGTGCGTACATTTGATTCTATGTTGGAAGAACTTGAATCGGCCGAAGAAAATATACGAAACCGGATCATACACCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCGGGGGTTGCCGCCGAACTCCTCTCAGATTCATATAACCAATGTTACTGGCGAAACTGCAACAGCAGGTGATGTTCAAGGTGAAGAACGGAGGGAGGAGCGGAATGATGCTGATCAGGATGATGGGATAGTTGAAAGTGTGAAAGGGGGGAAAAGGAAAAGTTCGCATTTGATAGCAAAAGCTTTAGGGATGGAAGAGATCGATGATGGTAAAGTGGAGGAGAGTAGTGGGAATTTCTTTGATTGTAATATTTGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCATATGCGTATTCGAAAGCAAAGGAATGTCCTGTTTGTAAAGGGGAGGTAACTGAATCGGGTATTATTCCAATTTATGGACATGGAAATGGCGGCGGTGATTGTCAGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTATTAGACAGAAGTTGCTAACCCAAGGAGCATCTTCTTCTTCTATTGTCCAAAGTATTCGGCGGTTTCATAGCCGAATCGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGCCCTAACAGTACCACACCTGATAGAAACAATGGTTTGCCTGCTCAGTCTCGCACGCAGACAGACAATAATGAACATGGTGGTTCTGAACAGGTTTCAAGGTTGATAGAGCAAGGAGCTTCTTCGTTTTCGTCACTTTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTCAGGACCTTGAATCATATATCAATGGTCACAGTACAGGAGGAAGCAGAGAGCAAAATCCTCCTGCTGTTACTAGAAATTCAACTTTAAGTGTTGCTGCTACAAACCAGTCAGAGAGTCGTGCTCAAGATGTTGTTGATCTGACCAATTCTGTAGCTGCAGCAGCTTCTGTTTCTCCTTTAAGTAGGAATGTTGATAATGTTGCTGTTACAAGCTCACAAATTCATACAACCGATAGAAACATACAGGTTAGTTCGCTAGACCCTTCTTCATCCAGAGGTAGAAGAGGAAATCGCGCTTCTAGACAAGTTTCAAATGAACCAAGAAGAAGAAGAAGATTGCGATGA 1374 0.4265 MPLRNQTKHNKQIGKSHHRRFNKQQPVSSSSSISTEPLDHQTSTSVRTFDSMLEELESAEENIRNRIIHLEAITSRARQRRGLPPNSSQIHITNVTGETATAGDVQGEERREERNDADQDDGIVESVKGGKRKSSHLIAKALGMEEIDDGKVEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGHGNGGGDCQMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFHSRIGGFGEQVQLESPNSTTPDRNNGLPAQSRTQTDNNEHGGSEQVSRLIEQGASSFSSLSSALNSAMDSAERLVQDLESYINGHSTGGSREQNPPAVTRNSTLSVAATNQSESRAQDVVDLTNSVAAAASVSPLSRNVDNVAVTSSQIHTTDRNIQVSSLDPSSSRGRRGNRASRQVSNEPRRRRRLR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00874 457 Pfam Zinc finger, C3HC4 type (RING finger) 161 208 - -
Mepo2g00874 457 SMART ring_2 162 202 IPR001841 -
Mepo2g00874 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 231 IPR013083 -
Mepo2g00874 457 Coils Coil 53 73 - -
Mepo2g00874 457 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 423 441 - -
Mepo2g00874 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 97 333 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo2g00874 457 MobiDBLite consensus disorder prediction 104 124 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 23 45 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 276 314 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 279 314 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 78 124 - -
Mepo2g00874 457 SUPERFAMILY RING/U-box 157 215 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 1 45 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 423 457 - -
Mepo2g00874 457 MobiDBLite consensus disorder prediction 80 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00874 Mepo-Chr2 11151525 11154051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00874 141 272 C3H Transcription Factor Family AT3G58030 49.635 2.54e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00874 - - cam:101488454 548.125