Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00870 ATGCAACCAAGAGCAAGTGCTGTAGACGTTATCCGTTTTAGCGCATCTAGTACGCCTAGCAATTCAAGAAGAGGATCTGAAGCAGATGATATTGAGTCACAAGGTGATGTTTACATATGGGGAGAGGTTTTTGCAGATGGATTTCCTTCAAAGACAGATGTGTTGACCCCCAGGCTGTTAGAGTCAACTGTTGTTCTTGATGTTCGTGACATTGTGTCCGGTACACATCACCTTGCTATAGTAAGCAGGAAAGGAAAGGTTTTTACTTGGGGTGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATTTTGGTAAGCCTCATCTAGTTGAGTTTCCTGATGTTGTTACTTTGGATATTGTTGCATGCGGAGAATTTCATACAAGTGCCGTGTCTAAATGTGATAATTTTTTTACATGGGGTGATGGTACACATAATGTTGGACTTCTTGGACATGGTAATGAGACTAGTCACTGGATACCAAAGAGTGTCAACGGCTTTTTGGATGGACTTCGTGTCGTATCTGTTGCATGTGGCTCATGGCATTCAGCATTGGCAACGTCAAATGGAAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTTTTGGGCCATGGTGATCAAGAGAGTGTAATGTATCCGAAGGAAGTGTGGTTATTAAGTGGACTCAAGACAGTTAAGGTTGCTTGTGGAGTATGGCATACTGCGGCTATTATCGAGGTTGCTTTTCAATCTGGTTCAAATGCTTCATCATGGAAGCTTTTCACATGGGGTGACGGTGACAAATATCGTTTAGGCCACGGAAACAAAGAAATGTACCTGAAACCAACACGTGTCTCGCCCCTTATTGAATATAATTTCCACCAGATAGCATGTGGACACACTATGACTGTTGCTCTCACTACATCTGGTCATGTATTTACAATGGGAAGCACGGAAAATGGTCAATTAGGAAATCCAAATGCTGCTGGAAAAGTACCTACTTTAGTTCAAGATAAGTTGCTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGCTGTGACTTCAAGAAGCGAACTATATACATGGGGAAAAGGTTCTAATGGAAGACTTGGACATGGTGACACAGACGATAGAAAATCTCCTACACTTGTGGTAGCCTTGAAAGATAGGCATTTGAAAAATATCTCATGTGGTTCAAACTTCACATCTTGTGTATGTAACCAAAAATACGTCAGTGGAACTGACCAGTCTGTTTGCTTTGGTTGTAGACAACCATTTGGTTTAACAAGAATACGGCACAATTGTAATAACTGTGGATTGGTTTTCTGTCATAATTGTAGTTCTAAAAAGGCAATCAAAGCTGCAATGGCTCCAACATTAGATAAACCTCATCGTGTGTGTGATACCTGTTTTACTAAGCTTAAAGTTGTTGACACCAATGATCCATCCAAGTTTAATGGAAAAGCTGTTGCTTCGCATTGTTCCACAACTGCTAATGAAAAATTAGACCAAGGTATTATAAGGTCTAATATAGCCCTCTTTTCTTCTACTACTGAACCAGTGAAATACCTTGAAATAAGGAATCATAAGCCTGGAACTGAACATGATTCTACTTCTTTTGTAAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATCACATTTCCAAGTTCACTGAGTTCTATTCCAAGTGTTCCGAAGCCTTCTACACCCCCTAGTTCATCACAAAGTTCCACATCCCCATACACAAGTAGATCAAGCCCTTCTCCCCCTTTGGTCACTCCACGATTTTCTGGTGGTATTATCAATAGTTTGGGAAGGACTAATGATGTTCTGAACCAACGAGTCTCGGATTTGCAGAGCCAAATTCGAAGTTTGGAGCAGAAAAGTGAAGTGAAAGATGTGGAAATTCAGAAACTTCAGAAAAAAGCTACTGAAGCCATTGCCATGGTTGCAGTGGAATCTTCTAGTCATACAGAAACAAAAGAGTTTATTGAATCTACAAAACATAAGTTGAAGGAAATGACTGAGAAGCTACCAGCAGATATACCGGAAAGAAATATCTTGAATACTATCCAAACTCGAAGTGAAGATTTTCTAAAAGAATTTTTGGAATCTGACAAATCAGAATTGGAATCCAATCAACAAAATACAGATGACATATCTGCCGCAGATAATGACTCGTCTAAACTAGAAAATATTGGACCAGTAGAACATGCTGTCCTTGTAGGAGTTCATTCTAGGTTAGAGGTTTTGCAACATGCAATTGATATATCTACCTCAAATAGTGGCAATTTTGAACTACAAGATCATAGAATACAAGACAATGCTGATGTTGGAGGAGTTGACCATTGTCAAAATGAAGGAAATGTTCTTGAAGAAATTAATAAACCAATGTTGGAGTCTGAGCAACGTAGTTCAACCAATACAGCTACCTCAGATAGCGAGACTTCTAAACTGCAAGAGCACATACATGAAAAAATTGATGAGACTGCAAGAGTTGATCAATTTGAGTCTGAAAAAAAAGTTTGTCGAGAAACTAATGGATCATGTAAGTTTAGTGGTGGAGAAGAGGTGTCATCCCAAAACTCCGAAAATAGTTCAACATCGCTGGACAGTTCAAGACATGAGAGACTGCCAGAATCACAATTCTTTGAAAAATTTCAGTCTGGTGTTTATGTGTTACTCATGCTACGGGCCGATGGAATCAAAATATTTAAAAGAGTTAAATTCAGTAAGAGAAGGTTCACTGAAACTCAAGCAGATGAATGGTGGAGGCTAAACAAAGGTTTGGGCTTGTGTGTTTTTCCCCTGCAGCTTGATCGCAAACCCGGACCAGTGATGTTGCCTTGTGGGCGACATATTCAGGATGTTTTGAGATTTTATATTCCGTCATTACTTGAAGTTAAAATTTGTTGCATTTTGTTTTCAAAATGTCTTTGA 2952 0.3919 MQPRASAVDVIRFSASSTPSNSRRGSEADDIESQGDVYIWGEVFADGFPSKTDVLTPRLLESTVVLDVRDIVSGTHHLAIVSRKGKVFTWGEESGGRLGHGIDKDFGKPHLVEFPDVVTLDIVACGEFHTSAVSKCDNFFTWGDGTHNVGLLGHGNETSHWIPKSVNGFLDGLRVVSVACGSWHSALATSNGKLFTFGDGTFGVLGHGDQESVMYPKEVWLLSGLKTVKVACGVWHTAAIIEVAFQSGSNASSWKLFTWGDGDKYRLGHGNKEMYLKPTRVSPLIEYNFHQIACGHTMTVALTTSGHVFTMGSTENGQLGNPNAAGKVPTLVQDKLLGEFVEEISCGAHHVAAVTSRSELYTWGKGSNGRLGHGDTDDRKSPTLVVALKDRHLKNISCGSNFTSCVCNQKYVSGTDQSVCFGCRQPFGLTRIRHNCNNCGLVFCHNCSSKKAIKAAMAPTLDKPHRVCDTCFTKLKVVDTNDPSKFNGKAVASHCSTTANEKLDQGIIRSNIALFSSTTEPVKYLEIRNHKPGTEHDSTSFVRASLVPSLLQLKDITFPSSLSSIPSVPKPSTPPSSSQSSTSPYTSRSSPSPPLVTPRFSGGIINSLGRTNDVLNQRVSDLQSQIRSLEQKSEVKDVEIQKLQKKATEAIAMVAVESSSHTETKEFIESTKHKLKEMTEKLPADIPERNILNTIQTRSEDFLKEFLESDKSELESNQQNTDDISAADNDSSKLENIGPVEHAVLVGVHSRLEVLQHAIDISTSNSGNFELQDHRIQDNADVGGVDHCQNEGNVLEEINKPMLESEQRSSTNTATSDSETSKLQEHIHEKIDETARVDQFESEKKVCRETNGSCKFSGGEEVSSQNSENSSTSLDSSRHERLPESQFFEKFQSGVYVLLMLRADGIKIFKRVKFSKRRFTETQADEWWRLNKGLGLCVFPLQLDRKPGPVMLPCGRHIQDVLRFYIPSLLEVKICCILFSKCL 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00870 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 487 IPR013083 -
Mepo2g00870 983 Gene3D - 252 411 IPR009091 -
Mepo2g00870 983 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Mepo2g00870 983 Pfam Regulator of chromosome condensation (RCC1) repeat 359 405 IPR000408 -
Mepo2g00870 983 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Mepo2g00870 983 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Mepo2g00870 983 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Mepo2g00870 983 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Mepo2g00870 983 SUPERFAMILY RCC1/BLIP-II 33 411 IPR009091 -
Mepo2g00870 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Mepo2g00870 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Mepo2g00870 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 857 878 - -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 857 873 - -
Mepo2g00870 983 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Mepo2g00870 983 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Mepo2g00870 983 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Mepo2g00870 983 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Mepo2g00870 983 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Mepo2g00870 983 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Mepo2g00870 983 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 562 603 - -
Mepo2g00870 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Mepo2g00870 983 Coils Coil 605 646 - -
Mepo2g00870 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Mepo2g00870 983 Pfam Transcription factor regulating root and shoot growth via Pin3 885 932 IPR013591 -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 801 824 - -
Mepo2g00870 983 Pfam FYVE zinc finger 413 475 IPR000306 GO:0046872
Mepo2g00870 983 SMART fyve_4 408 477 IPR000306 GO:0046872
Mepo2g00870 983 MobiDBLite consensus disorder prediction 718 732 - -
Mepo2g00870 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Mepo2g00870 983 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 669 - -
Mepo2g00870 983 Gene3D - 10 251 IPR009091 -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 710 733 - -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 804 820 - -
Mepo2g00870 983 SUPERFAMILY FYVE/PHD zinc finger 412 476 IPR011011 -
Mepo2g00870 983 ProSiteProfiles BRX domain profile. 885 940 IPR013591 -
Mepo2g00870 983 MobiDBLite consensus disorder prediction 574 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00870 Mepo-Chr2 11127440 11134102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00870 884 932 Major Intrinsic Protein MIP AT1G31880 34.694 8.57e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00870 - - mtr:11425711 1536.55