Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00829 ATGAGAGCTCATGGCATAGGCGATGAAACAAGTCAAATGGACGACGATGATCCGGCGAGCGATTGGGAAGGTGGCAATGTCCCACCAAGTAACAAACGTATGTATTCTTTAAGAACAAATCCTAATAAGCTAAAAAGTTGTAGGGTGTGTGAGCATTGTGGCAAAGAATTTTTTTCTTGGAAATCATTCCTCGAACACGGAAAATGCAACTCAGATGACGCGGATGAAGAGTTTATCATATCCTCTCCAGAATCCGACGCCATGGCAGACGATGGTGATGGCGTCAGTGGCAGGAGAGGATGTGGCTGGTCAAAAAGGAAAAGGTCGAAGCGAACTAAAGTAGGCGGTTACAATAACAATTATAATAATCCTTCAAGTGAAGAAGAAGATCTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGATCCTCTTGAGGTTGAACCAGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGTCTTGTAGAATTCCCTATGAAAACAACAATAACAACAATAAGGCCAAAGGTGTTGCAAAAGGGTTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAATTCACACCAAGCATTAGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCTGCAAGGCTTGATCAAAACCCTGAGGATAGTATTGTTGAGGATGATGTCATCACACAAGATGAATTTTTTCCTTCAAAATCAAACTCAACTCTACAATTTGATCATGGCACTTCTAACAACCCTACATTAATGGCTTCTTCATCCAAGAGAAAATCTAAAGTGCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCAGGACAGGCATTAGGTGGTCACAAGAGATGTCATTGGATTACATCAAATGCACCTGACCCATCAACATTGGCTAGGTTTCAACAATTTCAAGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCCGCTCCGACAAATACACAAATTTACTTGCAGCCAACATGGGGTGCAAATTCAAGTGCAACAAAGGACAACAATATCAAAGAGGATAACAATAGCCAACAAAATCAAAACAAAAACCTAGTTGATCAAAATAATGAAACTCAAGAGAACAACAAAAATAACAACCTTAATGCATTGGTACAAAATGTTGATAACGAAGATGATAGCAAGGTCAAGCTGGCAAAATTAAGTGAGTTAAAGGATGTAATTAACATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTACAACAACTGATGTGAGGAATGATACGTAA 1353 0.3858 MRAHGIGDETSQMDDDDPASDWEGGNVPPSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEEFIISSPESDAMADDGDGVSGRRGCGWSKRKRSKRTKVGGYNNNYNNPSSEEEDLANCLMMLSNAIVDPLEVEPEESCASASKDEERRNPMNFIAPLSCRIPYENNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNPEDSIVEDDVITQDEFFPSKSNSTLQFDHGTSNNPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDPSTLARFQQFQEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYLQPTWGANSSATKDNNIKEDNNSQQNQNKNLVDQNNETQENNKNNNLNALVQNVDNEDDSKVKLAKLSELKDVINIGGSSSPWLQVGIGTTTDVRNDT 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00829 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Mepo2g00829 450 MobiDBLite consensus disorder prediction 84 107 - -
Mepo2g00829 450 SMART c2h2final6 196 218 IPR013087 -
Mepo2g00829 450 SMART c2h2final6 48 68 IPR013087 -
Mepo2g00829 450 SMART c2h2final6 281 303 IPR013087 -
Mepo2g00829 450 SUPERFAMILY beta-beta-alpha zinc fingers 195 303 IPR036236 -
Mepo2g00829 450 Coils Coil 373 400 - -
Mepo2g00829 450 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Mepo2g00829 450 PANTHER OS02G0659100 PROTEIN 1 447 - -
Mepo2g00829 450 Gene3D Classic Zinc Finger 193 303 - -
Mepo2g00829 450 MobiDBLite consensus disorder prediction 355 380 - -
Mepo2g00829 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 303 IPR013087 -
Mepo2g00829 450 MobiDBLite consensus disorder prediction 1 38 - -
Mepo2g00829 450 ProSitePatterns Zinc finger C2H2 type domain signature. 283 303 IPR013087 -
Mepo2g00829 450 Pfam C2H2-type zinc finger 280 305 - -
Mepo2g00829 450 Pfam C2H2-type zinc finger 196 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00829 Mepo-Chr2 10444018 10445370 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00829 105 343 C2H2 Transcription Factor Family AT1G02040 36.885 1.13e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo2g00829 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00829 - - gmx:100793846 618.616