Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00824 ATGATGGAGAAACACAAGTGCAAATTTTGTATGAGAAGCTTTTCTAATGGTAGAGCTTTAGGTGGACACATGAGATCACACATGATGAACCTACCAAAACAAACTGAGTCATCACCACCACCACCACCGCCACGAGCACCAACTGTTCAGCTCAGTTTCGAAGCTGAATCAGCTTCATCTCTTTCATCTTATGGTCTAAGAGAGAATCCAAAGCGAAGCTTTCGATTCACAGATCCCAATCAATTCATCGACGCTGGTTCGATAATTCTTCAAGAAGATAGAGAAAGTGAAACTGAATCGTCGAAGAATCCAACTGGCCCACGATCCAAACGGGTCAAGAAAGTTGATCCGGTGAAAAACTCAATACAGAATGAGTCTGTTTCTGTACTGAGTTCTTCATCGGATATAACAACTGAAGAAGATGTAGCTTTTTTTCTCATATCATTGTCTCGCGAAGATAACAACATATGGAAAACTCATACACAACATCATGATCATCAAGATGAACAGTATGAACAACAACAGGTCGAAGAAGATGAAGAAGACGAAGATGTCGAGGAAGAAGATGAAGAAAGTGAAGCTGAATCTGAAGAGGAAGAAGAAGAAGAACTGAAACCGTTGAAGAAGGTACGAGGAAGATACAAATGCGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTAGGTGGACACAGAGCGAGTCACAAGAAAAATAAACAAGTTGCAGAAAGTGGTGGTGATTATTCAATTTCACAGCATCATGAAAAAATTAACATTGAAAAAAATATCAATGTTAGTGAAAAGAAAATTCATGAATGTCCAATTTGTTTTAGAGAATTTTCTTCAGGTCAAGCACTAGGTGGACATAGGAGAACACATAATTATGGATTCGGATCAACGTCAGCATCAACATCAGCAGCAGCAGCAACAACAATGGTAAGAACAAACCTCGAGGTTGCTCGAGGTTCCGCGAATGTTGGAGATAGTTTGTTAGATCTAAATTTTCCTGCTCCGATGGATGAAGATGAAGATGAAGATGATGGTGACGACGATGTTAGCCAAGTTGAAGGCTCTGCTGTTTCCGATGCTGAATTTGTCAAACCTCATTAA 1113 0.398 MMEKHKCKFCMRSFSNGRALGGHMRSHMMNLPKQTESSPPPPPPRAPTVQLSFEAESASSLSSYGLRENPKRSFRFTDPNQFIDAGSIILQEDRESETESSKNPTGPRSKRVKKVDPVKNSIQNESVSVLSSSSDITTEEDVAFFLISLSREDNNIWKTHTQHHDHQDEQYEQQQVEEDEEDEDVEEEDEESEAESEEEEEEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNKQVAESGGDYSISQHHEKINIEKNINVSEKKIHECPICFREFSSGQALGGHRRTHNYGFGSTSASTSAAAATTMVRTNLEVARGSANVGDSLLDLNFPAPMDEDEDEDDGDDDVSQVEGSAVSDAEFVKPH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00824 370 SMART c2h2final6 272 294 IPR013087 -
Mepo2g00824 370 SMART c2h2final6 5 27 IPR013087 -
Mepo2g00824 370 SMART c2h2final6 214 236 IPR013087 -
Mepo2g00824 370 Pfam C2H2-type zinc finger 213 238 - -
Mepo2g00824 370 Pfam C2H2-type zinc finger 5 28 - -
Mepo2g00824 370 Pfam C2H2-type zinc finger 272 294 - -
Mepo2g00824 370 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 330 370 - -
Mepo2g00824 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 294 IPR013087 -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 52 67 - -
Mepo2g00824 370 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Mepo2g00824 370 SUPERFAMILY beta-beta-alpha zinc fingers 213 294 IPR036236 -
Mepo2g00824 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Mepo2g00824 370 ProSitePatterns Zinc finger C2H2 type domain signature. 274 294 IPR013087 -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 160 206 - -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 90 118 - -
Mepo2g00824 370 Coils Coil 171 205 - -
Mepo2g00824 370 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Mepo2g00824 370 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 368 IPR044303 GO:0006355
Mepo2g00824 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 172 201 - -
Mepo2g00824 370 Gene3D Classic Zinc Finger 211 294 - -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 338 354 - -
Mepo2g00824 370 MobiDBLite consensus disorder prediction 30 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00824 Mepo-Chr2 10340768 10342092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00824 2 344 C2H2 Transcription Factor Family AT2G45120 39.944 6.26e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo2g00824 zf-C2H2_6 6.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00824 - - tpra:123923298 387.497