Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g00672 | ATGGAAGAAGACAACGCATTCAAAGATGAACAACTTGTTACAAACGAAGAACAAGAAATCAATGAATCCTTTGTTTGCTGCGTTTGCTTGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGCCACGTATCATGTTTCTGGTGTGTCCATAAATCAATGAATTCATCACGTGAATCCCATTGTCCAACTTGTAGGCATCCATACTACCACTTTCCAACAATCTGTGAAATGTTTCACTTTTTGCTTCTTAAGACATATCCTGAAGCTTACAAGAGAAGGGAAAATCAGACTCTGGAGGAAGAAAAGGAAATGGGTCACTCCTCCCCTCAAGTTATATGTGATCCTCCTGGAGATTCGCTTACCGGTACTACCATAAATCAGACGTCTAACTCAGGAAGCAAATTATCTTTTGAAAGTATGGAGCAATCAGGGTCTGCAAATCATAAAGGAGACGAAGGTATCATTTTGGAATACTCTTCTGACAGGAAACATGGAACTGTATTGCCTCAAAATGAGCACATTCAGCAACTGAAGATATCAGTTGCAGATTTAATGTGTCCAACGTGCAAGCAACTTCTCATTCATCCTGTTGCTCTTAATTGTGGTCATGTATATTGTGAGACTTGTATTACCGACTTATCTCATGAGATGTTTAGATGTCAAGTTTGTCAAAGTCCACATCCCGGAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCAATATTTAGAAGAGCAATTTCCAGAAGAGTACACACACAGAAGAGATGCAATTCAACTTGGCCAAATCAAAGTCCAACCTGAGACCACATCTTGTTCATTGTCTACAGACAACAAAGAAAGGATAGCTTGGGGGTCTAATCCTGAATTGTTGATTCACACAGGAGTTGGTTGTGATTTTTGTGGGTTGTACCCAATAATTGGGGACAGATATAAATGTGTTGACTGTGAAGAGAGTATCGGCTTTGATCTTTGTGGTGATTGCTATAACAAACGCTCAAAGCGTCCGGGCCGATTTAATCAGAAGCACACCCTTGACCACACACTCATGCTTGTACAATATCGAAGGATGCTAATTAGCCGTGGACAAGATTCTTCAGATTTAATAGTTATCCCGGATGATCCTGATTCCTCCACTGATGAGGAATAA | 1149 | 0.403 | MEEDNAFKDEQLVTNEEQEINESFVCCVCLDLLYKPIVLSCGHVSCFWCVHKSMNSSRESHCPTCRHPYYHFPTICEMFHFLLLKTYPEAYKRRENQTLEEEKEMGHSSPQVICDPPGDSLTGTTINQTSNSGSKLSFESMEQSGSANHKGDEGIILEYSSDRKHGTVLPQNEHIQQLKISVADLMCPTCKQLLIHPVALNCGHVYCETCITDLSHEMFRCQVCQSPHPGGFPKVCLALDQYLEEQFPEEYTHRRDAIQLGQIKVQPETTSCSLSTDNKERIAWGSNPELLIHTGVGCDFCGLYPIIGDRYKCVDCEESIGFDLCGDCYNKRSKRPGRFNQKHTLDHTLMLVQYRRMLISRGQDSSDLIVIPDDPDSSTDEE | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g00672 | 382 | FunFam | E3 ubiquitin-protein ligase PRT1 | 287 | 352 | - | - | |
| Mepo2g00672 | 382 | FunFam | E3 ubiquitin-protein ligase PRT1 | 17 | 112 | - | - | |
| Mepo2g00672 | 382 | ProSitePatterns | Zinc finger RING-type signature. | 202 | 211 | IPR017907 | - | |
| Mepo2g00672 | 382 | SUPERFAMILY | RING/U-box | 183 | 247 | - | - | |
| Mepo2g00672 | 382 | ProSiteProfiles | Zinc finger RING-type profile. | 26 | 66 | IPR001841 | - | |
| Mepo2g00672 | 382 | PANTHER | UNCHARACTERIZED | 16 | 352 | - | - | |
| Mepo2g00672 | 382 | ProSiteProfiles | Zinc finger ZZ-type profile. | 293 | 357 | IPR000433 | GO:0008270 | |
| Mepo2g00672 | 382 | SUPERFAMILY | RING/U-box | 286 | 352 | - | - | |
| Mepo2g00672 | 382 | SUPERFAMILY | RING/U-box | 10 | 77 | - | - | |
| Mepo2g00672 | 382 | Pfam | Zinc finger, C3HC4 type (RING finger) | 25 | 69 | - | - | |
| Mepo2g00672 | 382 | SMART | ring_2 | 26 | 65 | IPR001841 | - | |
| Mepo2g00672 | 382 | SMART | ring_2 | 187 | 224 | IPR001841 | - | |
| Mepo2g00672 | 382 | SMART | zz_5 | 292 | 338 | IPR000433 | GO:0008270 | |
| Mepo2g00672 | 382 | Pfam | RING-type zinc-finger | 187 | 221 | IPR027370 | - | |
| Mepo2g00672 | 382 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 123 | IPR013083 | - | |
| Mepo2g00672 | 382 | Pfam | Zinc finger, ZZ type | 292 | 334 | IPR000433 | GO:0008270 | |
| Mepo2g00672 | 382 | Gene3D | - | 288 | 353 | IPR043145 | - | |
| Mepo2g00672 | 382 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 254 | IPR013083 | - | |
| Mepo2g00672 | 382 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 225 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g00672 | Mepo-Chr2 | 8045577 | 8053206 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g00672 | 13 | 66 | C3H Transcription Factor Family | AT1G74990 | 41.818 | 2.19e-09 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g00672 | - | - | tpra:123920334 | 603.594 |