Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00641 ATGTTGAATCATGGGTCAAATGTTTCTGCTGAAGTGGGTGGTTGTTCTGATGAAGAATTATGGAAGGCAATTGCAGGACCATTGGTGGATGTTCCTTGTGTTGGTCAAAGTGTTTTCTATTTTCCCCAAGGACACATGGAACAATTGGAGGCTTCTACCAATCAAGAACTGAATCAGAGGATTCCTGTGTTGAAACTTCCTACAAAGATCCTTTGTCGTATCGTGAATATCCATTTACTGGCTGAACAAGAAACAGATGAAGTTTATGCTCAGATTACTTTGGTGCCAGAATCTAATCAAGATGAGCCTACAATCCCTGATCCGCCCACCGAGGAACCTCCAAGGCCGAAAATTCACTCATTCTGCAAGATCTTAACCGCTTCGGATACCAGTACACATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTCCTTTGGACATGTCCCAACCTACGCCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGGCACCTTCTTACCACTGGATGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCTGGGGATACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGCATGCCGTCATCTGTGATTTCTAGCCAGAGCATGCACCTAGGAGTTCTTGCAACTGCTTCCCATGCTGTTGCAACTCAGACTCTTTTCGTTGTATATTATAAGCCAAGAACGAGCCAGTTCATCGTAAGCGTGAACAAGTACTTGTCTGCTGTCAATAATAAGTTTGCTGTCGGCATGAGGTTCAAGATGAGGTTTGAGAGTGATGATTCTGCTGAGTCTGACAAAAGATTTTCCGGTACCATAGTTGGAGTTGAAGATATTTCTCCCCATTGGGTAAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAAGCTTCTGCTATTACAAGACCTGACAGGGTTTCACCGTGGGAGATAGAACCGTTTTTTTCTTCAGCTTCTACAACCACAGTTCAACCTACCGCTGCGAAGACTAAAAGGCCTCGACCAACCAGTGAAATTCCCGATGTTGACACAACATCAGCTGCCTCTATTTTCTGGGATGCTAGGATGTCACAAACTGATATGACCCAACGTATTATGAATAGTAAAACCATCAACAATGCTACATTGAGGAATCAAACTGAAGGAAGTTGGCTATCGTCTCCCCGTTCTAGCTATCCTTCTCATTTACTTAACGATACAACAGATGATGGCAAGAGTGTCTCGGCTTGGCCTGTTTCACAGCCTCAATCATCTATATTGAACATCGACCGTATGCTTGATCAAGTTGATAAGGACAACAAGGTCGAGACGGCTACAACTTATCGATTGTTTGGAATTGATCTTATTGATCATTCCAAAAAATCAGCTGCTGTAGAGATAGCATCTTCACATGCAGTAAACGGTAACGTAGTTACCACTGAAGTTAGTTCCAGCACCTTGTCGAGTACTGATACTGCTCGTAAGTCTGACATCTCGAAGGCTTCTTTCGAGAGGAAACAAGAACCACAACAAGTTTCACCTAAGGAGACTCAGAGCAAGCAGATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTTGGTCGCGCTGTGGATTTGGCAATGTTGAATGGGTATGATCAACTTATTGGTGAATTGGAAGAGCTGTTTGACATCAAGGGACAGCTTCAACACCGGAATACATGGGAAATTGTCTTCACTGATGACGAAGGAGATATGATGCTTGTCGGAGATGATCCATGGCCTGAGTTTTGTAACATGGTAAGAAGAATCTTCATTTGTTCCAGCCAAGATGTAAAGAAGATGAAATCAGGTAGCAAACTACCAATCTCTTCTTCGATTGAAGAAGGAACTGTAATAAGCTCAGACACAACCGAAAGATGA 2004 0.4346 MLNHGSNVSAEVGGCSDEELWKAIAGPLVDVPCVGQSVFYFPQGHMEQLEASTNQELNQRIPVLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQDEPTIPDPPTEEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSAVNNKFAVGMRFKMRFESDDSAESDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEASAITRPDRVSPWEIEPFFSSASTTTVQPTAAKTKRPRPTSEIPDVDTTSAASIFWDARMSQTDMTQRIMNSKTINNATLRNQTEGSWLSSPRSSYPSHLLNDTTDDGKSVSAWPVSQPQSSILNIDRMLDQVDKDNKVETATTYRLFGIDLIDHSKKSAAVEIASSHAVNGNVVTTEVSSSTLSSTDTARKSDISKASFERKQEPQQVSPKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLNGYDQLIGELEELFDIKGQLQHRNTWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMKSGSKLPISSSIEEGTVISSDTTER 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00641 667 FunFam Auxin response factor 550 643 - -
Mepo2g00641 667 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Mepo2g00641 667 CDD B3_DNA 119 221 IPR003340 GO:0003677
Mepo2g00641 667 SMART B3_2 121 223 IPR003340 GO:0003677
Mepo2g00641 667 Gene3D - 282 357 - -
Mepo2g00641 667 ProSiteProfiles PB1 domain profile. 555 636 IPR000270 GO:0005515
Mepo2g00641 667 Pfam AUX/IAA family 530 591 IPR033389 -
Mepo2g00641 667 Pfam AUX/IAA family 599 639 IPR033389 -
Mepo2g00641 667 SUPERFAMILY DNA-binding pseudobarrel domain 112 250 IPR015300 -
Mepo2g00641 667 FunFam Auxin response factor 119 223 - -
Mepo2g00641 667 SUPERFAMILY CAD & PB1 domains 556 631 - -
Mepo2g00641 667 MobiDBLite consensus disorder prediction 357 378 - -
Mepo2g00641 667 Pfam Auxin response factor 247 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo2g00641 667 Gene3D - 551 643 - -
Mepo2g00641 667 MobiDBLite consensus disorder prediction 535 555 - -
Mepo2g00641 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 643 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo2g00641 667 FunFam Auxin response factor 282 355 - -
Mepo2g00641 667 Gene3D - 118 222 IPR015300 -
Mepo2g00641 667 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Mepo2g00641 667 MobiDBLite consensus disorder prediction 532 555 - -
Mepo2g00641 667 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00641 Mepo-Chr2 7667807 7673060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00641 18 648 B3 DNA Binding Superfamily AT4G23980 60.156 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo2g00641 AUX_IAA 2.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00641 K14486 - gmx:100779003 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01599 3 23714281 23719136 Mepo2g00641 2 7667807 7673060 PCT