Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00451 ATGGAAATGGCGTCAAGTCCTCGCACCGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGCACTCTGTGATCCAGATAAGGACAACTTGTGCCTCTATGGACATCCAAGTGAATCATGGGAAGTGACTCTTCCTGCTGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCTCTCGGAATCAATTTTGCTAGGGATGGCATGAACCGTAGGGACTGGCTTTCCCTGGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGAGCTTCCAACTGTGTTTGAAGTTGTAACTGACAGGAAGCCAATAAAGGACAAGCCCACTGTAGATAGCGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGATGGACAAGTTAAAAGCAACCCAAAGTTGGTAGATGATCAAGGTTATGAGGAGGAAGAAGACGAGCATAGCGAAACCCTTTGTGGGACCTGCGGCGGAAACTACAATGCAGATGAATTTTGGATTGGCTGTGATATTTGTGAGAGGTGGTACCATGGAAAATGTGTGAAGATTACTCCTGCTAAAGCCGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATCAAGAGGGGCAGGCCCTAA 723 0.4578 MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHPSESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLVDDQGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKRGRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00451 240 Pfam PHD-finger 187 234 IPR019787 -
Mepo2g00451 240 FunFam PHD finger alfin-like protein 179 235 - -
Mepo2g00451 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Mepo2g00451 240 SMART PHD_3 186 234 IPR001965 -
Mepo2g00451 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Mepo2g00451 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Mepo2g00451 240 MobiDBLite consensus disorder prediction 140 177 - -
Mepo2g00451 240 CDD PHD_AL_plant 186 236 IPR044104 -
Mepo2g00451 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Mepo2g00451 240 MobiDBLite consensus disorder prediction 148 166 - -
Mepo2g00451 240 PANTHER CPG BINDING PROTEIN 6 239 IPR045104 GO:0006355|GO:0042393
Mepo2g00451 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00451 Mepo-Chr2 5347219 5351117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00451 4 239 Alfin-like Transcription Factor Family AT5G05610 77.215 4.56e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo2g00451 Alfin 9.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00451 K26274 - gmx:100782478 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01812 3 26662710 26665895 Mepo2g00451 2 5347219 5351117 PCT