Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00412 ATGGAAGGCAACAACACTACGGTTTCATCAACATCATCATCAGATGACAAACTCACCGATGGTAACGTTGTGTCCAATGGGAAACAACACTCTTCTCCTGATGACATAGAGACCTTCTATGTCAAACTCACTCAAGTGTTGGATTCCTCTGGCTTCAATCTCATTTTCAATGTCCGAGAAACATCCTTAGACTTGTATCTGCTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGGTTGCTCTACAAAACAAATGGGTTGAAGTTGTCTCTGCACTCAAACTAGAAGGCAACAATGCAATGTTATCTGCTCGACTTGAAATCCTCTATGCAATACTTCTATACAAATTTGAGAAATTGTACTTCTCTGCTAGCCCCAAAGATGGCAATGAAAAGAAGAAACGGCGAGGTGCTCCAACCGGAAAAAGTGGATATCAAATATTCCTCAAGGAGGAATGTGCACGATTAAAAGCTAATGATCCGGATGTAGATGGCAAAAATGTCCTGCGCATGGCTATTGATGCTTGGCAGAAGATGTCTGTCGACGATAAACAGCCATATGTGGAGGAAAGCAAAAAGATGAAGGAAACAAACAAGGAAGCGATGATCATTAACGACAATAAACAGAAGAGGCCTCGTGTGTCAGGTGACTCTAACCGTGTAACTTCGCAACCTCTAACAAGTTACTCTTTTGTCAACAACGCAGCCGCGAACGTGGCTTTTGAAATGACTGAAAAAACATTCAAGAATCCCTTCTTCCCGGTTGATTTCGATACTTACTGA 786 0.4198 MEGNNTTVSSTSSSDDKLTDGNVVSNGKQHSSPDDIETFYVKLTQVLDSSGFNLIFNVRETSLDLYLLYLEVTRRGGFHQVALQNKWVEVVSALKLEGNNAMLSARLEILYAILLYKFEKLYFSASPKDGNEKKKRRGAPTGKSGYQIFLKEECARLKANDPDVDGKNVLRMAIDAWQKMSVDDKQPYVEESKKMKETNKEAMIINDNKQKRPRVSGDSNRVTSQPLTSYSFVNNAAANVAFEMTEKTFKNPFFPVDFDTY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00412 261 SMART ARID_2 30 119 - -
Mepo2g00412 261 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 139 207 IPR009071 -
Mepo2g00412 261 CDD HMG-box_SF 143 197 - -
Mepo2g00412 261 SUPERFAMILY ARID-like 33 127 IPR036431 GO:0003677
Mepo2g00412 261 MobiDBLite consensus disorder prediction 1 32 - -
Mepo2g00412 261 Pfam ARID/BRIGHT DNA binding domain 37 119 IPR001606 GO:0003677
Mepo2g00412 261 CDD ARID 37 119 - -
Mepo2g00412 261 Gene3D - 16 135 IPR036431 GO:0003677
Mepo2g00412 261 SMART hmgende2 133 208 IPR009071 -
Mepo2g00412 261 Gene3D High mobility group box domain 136 219 IPR036910 -
Mepo2g00412 261 SMART bright_3 34 124 IPR001606 GO:0003677
Mepo2g00412 261 SUPERFAMILY HMG-box 128 203 IPR036910 -
Mepo2g00412 261 ProSiteProfiles ARID domain profile. 26 123 IPR001606 GO:0003677
Mepo2g00412 261 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 132 221 - -
Mepo2g00412 261 Pfam HMG (high mobility group) box 143 203 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00412 Mepo-Chr2 4566779 4568179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00412 63 123 ARID Transcription Factor Family AT1G76110 37.705 2.31e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo2g00412 ARID 4.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00412 - - psat:127121142 244.973