Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00129 ATGGATGGTATTCATGATGTTGATTCGCGGATGCAGATCAATGATGGACAACATCCTATACATACGTCATATGAACATCATGGGATGCACCATATGAATAATGGGAATGAGATGGATGGTGATCAAAACAACAGCGTTGGCGGTGATTCTAACTGCGGAGGAACTGAGAGTGCGGAAGGTGAAATCCACTCTAACAATGGAAATCTCCATGACAATCACACTTTAATAATTGATCAAGGGAATGATATTGGAGATCAGCTTACTTTGTCTTTTCAGGGACAGGTTTACGTCTTTGACTCCGTGTCACCAGAGAAGGTTCAATCTGTACTACTGTTATTGGGAGGGCGTGAAGTACCTCCAACGTCACCTTCCATGCCAATTTCTCCGGACGAAAATAACCAGGGATTTATTGGTACGCCACAAAAATTCAGCATCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAACGAAATTTCAACAAAAAAATTCGTTATACAGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGCCAATTTACATCAGCCAAGTCCAATCCTGATGAGTTTGCATCAGCCAAGGCCAATTTAAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAATAATGGATCTCAACAGCAAGATACTGTTTGTAGGCATTGTGGCATCAGTGAGAATTGCACGCCAATGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCGCTTAGGGACCTATCAAGGGCAGCAACCTTGCCAGCATATAAGTCTCCATTAAACAAGAATGAGAATAGTAATTTAGAGGCCAATCAGACAGTGCTTAGAGATGCTGCTGAACCCTCATGA 906 0.4272 MDGIHDVDSRMQINDGQHPIHTSYEHHGMHHMNNGNEMDGDQNNSVGGDSNCGGTESAEGEIHSNNGNLHDNHTLIIDQGNDIGDQLTLSFQGQVYVFDSVSPEKVQSVLLLLGGREVPPTSPSMPISPDENNQGFIGTPQKFSIPQRLASLIRFREKRKERNFNKKIRYTVRKEVALRMQRNKGQFTSAKSNPDEFASAKANLNCGTSEGLMADNNGSQQQDTVCRHCGISENCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRAATLPAYKSPLNKNENSNLEANQTVLRDAAEPS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00129 301 Gene3D - 216 277 IPR013088 GO:0006355|GO:0008270
Mepo2g00129 301 ProSiteProfiles GATA-type zinc finger domain profile. 220 276 IPR000679 GO:0006355|GO:0043565
Mepo2g00129 301 PANTHER GATA TRANSCRIPTION FACTOR 28 23 291 IPR045280 GO:0006355
Mepo2g00129 301 Pfam CCT motif 148 190 IPR010402 GO:0005515
Mepo2g00129 301 ProSiteProfiles Tify domain profile. 80 115 IPR010399 -
Mepo2g00129 301 SMART tify_2 80 115 IPR010399 -
Mepo2g00129 301 SMART GATA_3 220 277 IPR000679 GO:0006355|GO:0043565
Mepo2g00129 301 Pfam GATA zinc finger 226 261 IPR000679 GO:0006355|GO:0043565
Mepo2g00129 301 CDD ZnF_GATA 225 267 IPR000679 GO:0006355|GO:0043565
Mepo2g00129 301 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Mepo2g00129 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Mepo2g00129 301 MobiDBLite consensus disorder prediction 36 67 - -
Mepo2g00129 301 Pfam tify domain 86 114 IPR010399 -
Mepo2g00129 301 MobiDBLite consensus disorder prediction 20 34 - -
Mepo2g00129 301 ProSiteProfiles CCT domain profile. 148 190 IPR010402 GO:0005515
Mepo2g00129 301 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00129 Mepo-Chr2 1312164 1316346 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00129 1 298 Tify Gene Family AT1G51600 59.801 5.23e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo2g00129 CCT 1.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00129 - - pvu:PHAVU_008G254600g 437.573