Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g00127 ATGGCGTCTCAGAAACTCAGTGAGTACGAACTCAAGCGACTTGAAAACATTCGACACAACAATGAAATGATAGCCGAACTCAAACTTCAATCCAAAGCCTCCCAACTCTCCAACAAACGGGTCATTACCAAATCAAAGAAAAGCCCCAAAACTCAATCCCCATTTCGAACAAGAGGTATTCCACCCGATTTCAAAGGTTTAGATTTCCATCCTAAAACTCCTACTTCACCCAAATTTACAGTTTCTCAGAGATTAGCTTCATTGGTCACATTTTGCCAAAAGCAGAAGGAACCAAATTCTGACAAAAAAATTCGGTATAATGTTCGTAAAGAGGTAGCATTAAGGATGCAAAGAAATAAAGGCCGATTTGCATCTGCCAAGTCCAACCATGATGGGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGTAGACAATGATGGATCCCAACAGCAAGATAATGTTTGTAGGCATTGTAACATCAGTGAGAAGTGCACGCCAATGATGCGGTGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTCTGTGGGCAAATAAGCCATTGATTGGGCTTATGTTTCATGCCTTCTTTTCAGATTTGCAGCAAAAATGGGAGGTAGTAGAAGACTGGGCGTACAACCTAAGTTTATATGCAGAAGTTGTTAGTTGGGATGATGAATTTGACGCTGTTAATGGAAGAAATATAATTCCACCCAATGTTGATGGGGATTGCAACATACATGAAATGAAGATTCGCCCAGCGAAATCTGCTTGCCTAGTGAATCTGCTCTTGCATCTCCCTGGAACTTCTCTAGAGACCCTCGTTTTAGCCTCGCTCTTGCTCGGCCAGCGAATCTTGGAAAACTTGACAGTTTCTTCTGATTCGACCCCAGAAACCTTTGAACTCTCTGGCCTGTCTTGCTTCTGA 951 0.4301 MASQKLSEYELKRLENIRHNNEMIAELKLQSKASQLSNKRVITKSKKSPKTQSPFRTRGIPPDFKGLDFHPKTPTSPKFTVSQRLASLVTFCQKQKEPNSDKKIRYNVRKEVALRMQRNKGRFASAKSNHDGSASAEMNCGTSEGLMVDNDGSQQQDNVCRHCNISEKCTPMMRCGPEGPRTLCNACGLLWANKPLIGLMFHAFFSDLQQKWEVVEDWAYNLSLYAEVVSWDDEFDAVNGRNIIPPNVDGDCNIHEMKIRPAKSACLVNLLLHLPGTSLETLVLASLLLGQRILENLTVSSDSTPETFELSGLSCF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g00127 316 Gene3D - 150 200 IPR013088 GO:0006355|GO:0008270
Mepo2g00127 316 PANTHER GATA TRANSCRIPTION FACTOR 28 73 194 IPR045280 GO:0006355
Mepo2g00127 316 CDD ZnF_GATA 159 194 IPR000679 GO:0006355|GO:0043565
Mepo2g00127 316 ProSiteProfiles CCT domain profile. 84 126 IPR010402 GO:0005515
Mepo2g00127 316 MobiDBLite consensus disorder prediction 38 65 - -
Mepo2g00127 316 Pfam GATA zinc finger 160 194 IPR000679 GO:0006355|GO:0043565
Mepo2g00127 316 MobiDBLite consensus disorder prediction 38 55 - -
Mepo2g00127 316 Pfam CCT motif 84 126 IPR010402 GO:0005515
Mepo2g00127 316 SMART GATA_3 154 209 IPR000679 GO:0006355|GO:0043565
Mepo2g00127 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g00127 Mepo-Chr2 1302566 1306056 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g00127 71 194 Tify Gene Family AT1G51600 62.097 5.82e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo2g00127 CCT 1.1e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g00127 - - pvu:PHAVU_008G254600g 184.882