LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g00088	ATGTTTGACTCTGGTTACAAGTCACAGTATATTGAAGGTCAGAAGGAGAAATTTGTGAGGTTGGATGATTTGGATTCCAATTCGTCAATGCCATCTAGCTCAAGTGGGATGAAGAAGTTAAGATTTAATTTAGATTGTTTGCCTTTTCCTATTCCTGGCCGCGGGAAAAAAAAATCGTCGAAATCGTTTCGAGTCGGAGTGAAAAAGGGATCAGATGGACTAATGAATTTTGGAAGATCACTCAAAAGTGGAGTCACTTGGGGAGTTTTTCCGGAAGATCTTAAAGTGTCACAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTGTATTGGAACAAGTTTTTCGAGATTCTATGCATCCTTTCTGTAGCTTGTGATCCTTTCTTTTTTTATCTTCCTTATTTCAACCACAGATCATTTTGTTTAGCCATAGATAACAAGCTAGCAAGTTTTATTGTTACATTGAGAACAATATGTGATTGTATTTATCTCATTCGCATAAGTTTCCAATTCCGCACCGCCTTCATTGCACCTTCATCTCGAGTATTTGGAAGAGGTGAACTTGTTATAGATCCTGGATTGATCGCAAAGCGATATTTACAGCGCTATTTCATTATTGACTTCTGGTCTGTACTGCCACTGCCACAGATTGTAGTGTGGAGGTATCTTTATAGCGCAAGACGCATGGAGGTATTGGATACAAAAACATCACTATTGAGACATGTCATCATGCAATATTTTCCAAGAATGGTACGGTTCATACCTTTGGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATAACGGGTTCTGTATGGTACTTACTAGCGATAGAACGTAACGACACATGCTGGAAGAATGCATGTAAAGAAGTTGAAGGATGTAATTCACATTTCTTGTATTGTGGAAGTTCAAGTAAGCATATACCAGGGTATGAAAATTGGAGAAATGTCAGTCAATCTGTACTTAAAAGTAAATGCTTTGTTGAAGATGATAACTCAGCTTTTAACTATGGAATCTTTTCTCAAGCTATAGAATCTCATATTGTTGCTTCCATAGAAGTTTTCCCCAAATTTTGTTACTGTCTATGGTGGGGACTTCAGAATTTAAGTACGCTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTCTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGACCTAAGGGAAAGAGTCAGACGCTACGACCAATACAAGTGGTTGAACACCCGAGGAGTCGATGAAGAAAATTTGGTTCAGAGTCTTCCAAAAGATCTTAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGACGCGATATGTGAGCGATTGAAACCGAGTTTATATACAGAGCAAACTTTCATAGTTAGGGAAGGCGATCCAGTTGATGAGATGTTGTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGCTTCTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTTTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAGTCTGCAGCAAGCTTGCCATCATCAACAAGAACCGTGAAAGCTATGAGCGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTGAAGTTTGTTGCATCACAGTTTAGACACATACATAGTAGACAGGTTCAGCATACATTCCGTTTCTATTCGCAACAATGGAGAACATGGGCTGCAATCTATATTCAAGCTGCATGGAGGAAGCATTTAAGGCGAAGACGAAGGAAGGAGGAAGAAGAATACTACGAATCTGATTACCCAGGAAGTGATGATTCTGCAAGGGCGTTGGTTCCGCGTCCTGAAAGTTCGTCAAAATTTGGACTTAACACAACAGTCTATGCTTCTCGGTTTGCTGCTAACCTTCGTGGTCATAGACTTCGAGTACCAAGTTCAAGAGAGCTGGTGAATATCCCAAAGCCCTCAGAACCTGATTTCAGTGCTCTCAATGATGAAGAGTGA	2235	0.4063	MFDSGYKSQYIEGQKEKFVRLDDLDSNSSMPSSSSGMKKLRFNLDCLPFPIPGRGKKKSSKSFRVGVKKGSDGLMNFGRSLKSGVTWGVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSVACDPFFFYLPYFNHRSFCLAIDNKLASFIVTLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLQRYFIIDFWSVLPLPQIVVWRYLYSARRMEVLDTKTSLLRHVIMQYFPRMVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEGCNSHFLYCGSSSKHIPGYENWRNVSQSVLKSKCFVEDDNSAFNYGIFSQAIESHIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEQTFIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAASLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLRRRRRKEEEEYYESDYPGSDDSARALVPRPESSSKFGLNTTVYASRFAANLRGHRLRVPSSRELVNIPKPSEPDFSALNDEE	744

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g00088	744	ProSiteProfiles	cAMP/cGMP binding motif profile.	511	641	IPR000595	-
	Mepo2g00088	744	FunFam	Cyclic nucleotide-gated ion channel 1	438	502	-	-
	Mepo2g00088	744	SUPERFAMILY	cAMP-binding domain-like	441	631	IPR018490	-
	Mepo2g00088	744	Gene3D	Helix hairpin bin	438	502	-	-
	Mepo2g00088	744	Pfam	Cyclic nucleotide-binding domain	532	621	IPR000595	-
	Mepo2g00088	744	MobiDBLite	consensus disorder prediction	724	744	-	-
	Mepo2g00088	744	CDD	CAP_ED	511	642	IPR000595	-
	Mepo2g00088	744	FunFam	Cyclic nucleotide-gated ion channel 1	509	627	-	-
	Mepo2g00088	744	ProSiteProfiles	IQ motif profile.	647	676	IPR000048	GO:0005515
	Mepo2g00088	744	SMART	cnmp_10	511	642	IPR000595	-
	Mepo2g00088	744	Gene3D	Jelly Rolls	509	629	IPR014710	-
	Mepo2g00088	744	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	93	737	-	-
	Mepo2g00088	744	SUPERFAMILY	Voltage-gated potassium channels	104	433	-	-
	Mepo2g00088	744	MobiDBLite	consensus disorder prediction	670	695	-	-
	Mepo2g00088	744	Gene3D	-	114	436	-	-
	Mepo2g00088	744	Pfam	Ion transport protein	111	438	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g00088	Mepo-Chr2	901652	905310	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g00088	6	739	Ion Channels	AT1G15990	67.867	0.0	995

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g00088	K05391		-	gmx:100810453	1228.77