Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo28g00022 ATGCAGGAGTCAGAAGAAGAAAATCATGACCTTCCTCAAAAGTCAAAACCACTAGATGAAAATGTGTTTTCCATGGATTATGATATTGACTTTGAAACTTCATGGCCTTTGGATCATATATCTAACTACATGCATCCTTTTTTCTTGCAAAATATCTCTGAACAACCTTTTTCTCCTATTTGGACTTTTTCTGATGATGATCACAACATTGCAGCTTCAGGTAACAACAAAAACGTAATAACTGAAAGCCGAGTCGAAAATGATGACAAGCAAAATCATGTGACACCCCATATAGCTCTACCACCTTTACAGAATCCACATGGTTATTGCCTAATCAAGGAAAGAATGACACAAGCTCTTAGAAACTTCAAAGAGTTAACTGAACTGAATGTTCTTGCTCAAGTTTGGGCGCCCATGAGGAATGGAAGTCGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTCGATGCACATAGCAATGGACTTCATCAGTATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGATGGAGAAAACGACGAAGTTTTAGGACTTCCTGGAAGAGTTTTTCAGCAGAAGTTACATGAATGGACTCCTAATGTTCAGTATTATTCTAGTAAAGAGTATTCAAGGCTAAATCATGCTCTACATTATAATGTTCGCGGAACTTTGGCTTTGCCGGTGTTTGAACCTCCGGGCCAGTCATGTGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGTCAAATAACATGGCAATTCTTTTAAACCAGATATGTAACGAAGATAGGCAGAATGCATTATCCGAGATTTTGGTGATATTGACGGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCATGCAGGCATAGAAGTGTTTTGGCTCATGGTGGTGGTCTAAAGAAAAATTGCTCAAGTTTTGATGGTTATTGTATGGGACAAGTTTGCATGTCAATAACCGAGGTAGCATTCTATATCATAGATTCTCACACATGGGGTTTCCATGATGCATGTGTTGAACATCACTTACAACAAGGTCAAGGAGTTGCCGGAAGAGCTTTTTTGTCTCAAAACATGTGTTTCTGTGGAAACATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACACTATGCTCTCATGTTTGATTTAACAAGCTCTTTTTCAATATGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTACTAGAGTTTTTTCTTCCTCCTAGTATCAATAAATTTTGTGAACAAGAGGGTTTGTTAGGATCAATATTGGCAACAATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGCATTGAACTTGAGGAGGATGGATCAATTGAAATTGTTGAAATAATAAATGGAACAGTTCATTCGAGGCTTGAATCAGTTCCGATTATTCAATCTACTAAATTATCAGCTAGACATGATGATGCCTCGCCGGATATGGAGGAGGGAGTGCCACTAGATCAATCACGACAGAAAATAATCACAAATTTTGATGACATAAGTGATAGAGGGAATCTTGATGATTATGCAGGTGGAAACATTGATCAGATCCCTTCCTTGGAGACTGAAACCAAAAAGAAACCGTCGTTGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGAAGTCTTGCAAGATTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGAGTTTGTCCAACTACAATGAAGCGAATTTGCAGGCAGCACGGAATATCCCGTTGGCCTTCTCGAAAGATAAAAAAGGTTAAACGTTCGCTGTCCAAGCTCAAATGTGTGATTGAATCGGTCCACGGTGTTGAAGGAGCATTTGGTTTGAATTCTCCAAGTACAAGCACACTCCCTATTGCTGCTGGTTCCTTTAATGAACCTTCTACTTCGAACAAGTGTGAACACCATACCTCATTAAGCATAAGGCCATCAGAACCTATGAAGAGCGAAAACAATTTAGATACGTCTAAATCAGAACCTCAAGAACCATTTGGAGGAATGCCAATCGAAGGTGCTGATAGTTCTAAAGACTTGAAAAATCTGTTTCCTTCAACAGATGTCGTTTTGGAGGATCAGGTCCTAGAAGCTTCAAGGATTCATCCTCCATGTTCTGATTTTGTTCATATGCAAATGCAGAACATGGATACTCTTAATTTTGCAGCTCAGAAAGAGATGAAGATTGTGACTATAAAGGCAACATATAGAGATGATATCATAAGGTTTAGGGTTTCTTGGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTGCTAAAAGACTAAAACTAGAGGTAGGGACATTCGATATCAAGTATTTGGATGATGATCAAGAGTGGATATTGGTAGCTTGTGATGCAGATTTACAGGAGTGCATGGACATTTTAACATTATCAGGAAGAAACATTATCCGGCTTGTTGTGCATGATATTTTGTCCATTCTTGGAAGCTCGGTTGAGAGCTCGGGGGAGTGA 2604 0.3867 MQESEEENHDLPQKSKPLDENVFSMDYDIDFETSWPLDHISNYMHPFFLQNISEQPFSPIWTFSDDDHNIAASGNNKNVITESRVENDDKQNHVTPHIALPPLQNPHGYCLIKERMTQALRNFKELTELNVLAQVWAPMRNGSRYKLTTSGQPFVLDAHSNGLHQYRTVSLMYMFSVDGENDEVLGLPGRVFQQKLHEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQSNNMAILLNQICNEDRQNALSEILVILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKNCSSFDGYCMGQVCMSITEVAFYIIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCGNITQFCKTDYPLVHYALMFDLTSSFSICLQSSHTGSDDYVLEFFLPPSINKFCEQEGLLGSILATMKQNFQSLKVASGIELEEDGSIEIVEIINGTVHSRLESVPIIQSTKLSARHDDASPDMEEGVPLDQSRQKIITNFDDISDRGNLDDYAGGNIDQIPSLETETKKKPSLRKRGKAEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVKRSLSKLKCVIESVHGVEGAFGLNSPSTSTLPIAAGSFNEPSTSNKCEHHTSLSIRPSEPMKSENNLDTSKSEPQEPFGGMPIEGADSSKDLKNLFPSTDVVLEDQVLEASRIHPPCSDFVHMQMQNMDTLNFAAQKEMKIVTIKATYRDDIIRFRVSWNCGIVELREEIAKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDILTLSGRNIIRLVVHDILSILGSSVESSGE 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo28g00022 867 Pfam RWP-RK domain 583 631 IPR003035 -
Mepo28g00022 867 PANTHER PROTEIN NLP8 54 866 IPR045012 GO:0003700
Mepo28g00022 867 SUPERFAMILY CAD & PB1 domains 770 857 - -
Mepo28g00022 867 ProSiteProfiles PB1 domain profile. 772 854 IPR000270 GO:0005515
Mepo28g00022 867 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Mepo28g00022 867 Gene3D - 769 853 - -
Mepo28g00022 867 SMART PB1_new 772 854 IPR000270 GO:0005515
Mepo28g00022 867 MobiDBLite consensus disorder prediction 665 704 - -
Mepo28g00022 867 CDD PB1_NLP 773 853 IPR034891 -
Mepo28g00022 867 MobiDBLite consensus disorder prediction 665 715 - -
Mepo28g00022 867 Pfam PB1 domain 773 853 IPR000270 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo28g00022 167 867 NLP Transcription Factor Family AT1G64530 55.119 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mepo28g00022 PB1 3.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo28g00022 - - mtr:25479714 1659.43