LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo28g00022	ATGCAGGAGTCAGAAGAAGAAAATCATGACCTTCCTCAAAAGTCAAAACCACTAGATGAAAATGTGTTTTCCATGGATTATGATATTGACTTTGAAACTTCATGGCCTTTGGATCATATATCTAACTACATGCATCCTTTTTTCTTGCAAAATATCTCTGAACAACCTTTTTCTCCTATTTGGACTTTTTCTGATGATGATCACAACATTGCAGCTTCAGGTAACAACAAAAACGTAATAACTGAAAGCCGAGTCGAAAATGATGACAAGCAAAATCATGTGACACCCCATATAGCTCTACCACCTTTACAGAATCCACATGGTTATTGCCTAATCAAGGAAAGAATGACACAAGCTCTTAGAAACTTCAAAGAGTTAACTGAACTGAATGTTCTTGCTCAAGTTTGGGCGCCCATGAGGAATGGAAGTCGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTCGATGCACATAGCAATGGACTTCATCAGTATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGATGGAGAAAACGACGAAGTTTTAGGACTTCCTGGAAGAGTTTTTCAGCAGAAGTTACATGAATGGACTCCTAATGTTCAGTATTATTCTAGTAAAGAGTATTCAAGGCTAAATCATGCTCTACATTATAATGTTCGCGGAACTTTGGCTTTGCCGGTGTTTGAACCTCCGGGCCAGTCATGTGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGTCAAATAACATGGCAATTCTTTTAAACCAGATATGTAACGAAGATAGGCAGAATGCATTATCCGAGATTTTGGTGATATTGACGGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCATGCAGGCATAGAAGTGTTTTGGCTCATGGTGGTGGTCTAAAGAAAAATTGCTCAAGTTTTGATGGTTATTGTATGGGACAAGTTTGCATGTCAATAACCGAGGTAGCATTCTATATCATAGATTCTCACACATGGGGTTTCCATGATGCATGTGTTGAACATCACTTACAACAAGGTCAAGGAGTTGCCGGAAGAGCTTTTTTGTCTCAAAACATGTGTTTCTGTGGAAACATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACACTATGCTCTCATGTTTGATTTAACAAGCTCTTTTTCAATATGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTACTAGAGTTTTTTCTTCCTCCTAGTATCAATAAATTTTGTGAACAAGAGGGTTTGTTAGGATCAATATTGGCAACAATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGCATTGAACTTGAGGAGGATGGATCAATTGAAATTGTTGAAATAATAAATGGAACAGTTCATTCGAGGCTTGAATCAGTTCCGATTATTCAATCTACTAAATTATCAGCTAGACATGATGATGCCTCGCCGGATATGGAGGAGGGAGTGCCACTAGATCAATCACGACAGAAAATAATCACAAATTTTGATGACATAAGTGATAGAGGGAATCTTGATGATTATGCAGGTGGAAACATTGATCAGATCCCTTCCTTGGAGACTGAAACCAAAAAGAAACCGTCGTTGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGAAGTCTTGCAAGATTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGAGTTTGTCCAACTACAATGAAGCGAATTTGCAGGCAGCACGGAATATCCCGTTGGCCTTCTCGAAAGATAAAAAAGGTTAAACGTTCGCTGTCCAAGCTCAAATGTGTGATTGAATCGGTCCACGGTGTTGAAGGAGCATTTGGTTTGAATTCTCCAAGTACAAGCACACTCCCTATTGCTGCTGGTTCCTTTAATGAACCTTCTACTTCGAACAAGTGTGAACACCATACCTCATTAAGCATAAGGCCATCAGAACCTATGAAGAGCGAAAACAATTTAGATACGTCTAAATCAGAACCTCAAGAACCATTTGGAGGAATGCCAATCGAAGGTGCTGATAGTTCTAAAGACTTGAAAAATCTGTTTCCTTCAACAGATGTCGTTTTGGAGGATCAGGTCCTAGAAGCTTCAAGGATTCATCCTCCATGTTCTGATTTTGTTCATATGCAAATGCAGAACATGGATACTCTTAATTTTGCAGCTCAGAAAGAGATGAAGATTGTGACTATAAAGGCAACATATAGAGATGATATCATAAGGTTTAGGGTTTCTTGGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTGCTAAAAGACTAAAACTAGAGGTAGGGACATTCGATATCAAGTATTTGGATGATGATCAAGAGTGGATATTGGTAGCTTGTGATGCAGATTTACAGGAGTGCATGGACATTTTAACATTATCAGGAAGAAACATTATCCGGCTTGTTGTGCATGATATTTTGTCCATTCTTGGAAGCTCGGTTGAGAGCTCGGGGGAGTGA	2604	0.3867	MQESEEENHDLPQKSKPLDENVFSMDYDIDFETSWPLDHISNYMHPFFLQNISEQPFSPIWTFSDDDHNIAASGNNKNVITESRVENDDKQNHVTPHIALPPLQNPHGYCLIKERMTQALRNFKELTELNVLAQVWAPMRNGSRYKLTTSGQPFVLDAHSNGLHQYRTVSLMYMFSVDGENDEVLGLPGRVFQQKLHEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQSNNMAILLNQICNEDRQNALSEILVILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKNCSSFDGYCMGQVCMSITEVAFYIIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCGNITQFCKTDYPLVHYALMFDLTSSFSICLQSSHTGSDDYVLEFFLPPSINKFCEQEGLLGSILATMKQNFQSLKVASGIELEEDGSIEIVEIINGTVHSRLESVPIIQSTKLSARHDDASPDMEEGVPLDQSRQKIITNFDDISDRGNLDDYAGGNIDQIPSLETETKKKPSLRKRGKAEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVKRSLSKLKCVIESVHGVEGAFGLNSPSTSTLPIAAGSFNEPSTSNKCEHHTSLSIRPSEPMKSENNLDTSKSEPQEPFGGMPIEGADSSKDLKNLFPSTDVVLEDQVLEASRIHPPCSDFVHMQMQNMDTLNFAAQKEMKIVTIKATYRDDIIRFRVSWNCGIVELREEIAKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDILTLSGRNIIRLVVHDILSILGSSVESSGE	867

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo28g00022	867	Pfam	RWP-RK domain	583	631	IPR003035	-
	Mepo28g00022	867	PANTHER	PROTEIN NLP8	54	866	IPR045012	GO:0003700
	Mepo28g00022	867	SUPERFAMILY	CAD & PB1 domains	770	857	-	-
	Mepo28g00022	867	ProSiteProfiles	PB1 domain profile.	772	854	IPR000270	GO:0005515
	Mepo28g00022	867	ProSiteProfiles	RWP-RK domain profile.	570	651	IPR003035	-
	Mepo28g00022	867	Gene3D	-	769	853	-	-
	Mepo28g00022	867	SMART	PB1_new	772	854	IPR000270	GO:0005515
	Mepo28g00022	867	MobiDBLite	consensus disorder prediction	665	704	-	-
	Mepo28g00022	867	CDD	PB1_NLP	773	853	IPR034891	-
	Mepo28g00022	867	MobiDBLite	consensus disorder prediction	665	715	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo28g00022	167	867	NLP Transcription Factor Family	AT1G64530	55.119	0.0	727

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Mepo28g00022		PB1	3.4e-18	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo28g00022	-		-	mtr:25479714	1659.43

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