Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo28g00010 ATGGAGAAACAAGAACCATCTCAACCTACAAATCAAGGTAATGAAAAGAAAAAACATTATAGAGGTGTAAGGCAAAGACCTTGGGGAAAATGGGCAGCTGAAATAAGAGATCCTAAAAAAGGAGCAAGAGTGTGGCTTGGTACCTTTGAAACAGCTGAAGCTGCAGCTACTGCCTATGATGAAGCTGCATTGAGATTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTCAACTCATTTCTAATTTGCCATCGGATCCAACACCGCCGCGTAATAAGAATAATGCTTCATCTTCTTCCTCTTCTTCTTCGCAGCTTGCTCCACCGAAGCCTCTTAATCGTTCATCGTCATCATCAGAAGAAGTGTTCCCAAACCTAATGCAATATGCACAAGTGCTTTGTAGTAAGGATGATGAAGATCTTCGACGTGCTGCTTCAAGTCTTTACAATAATAATAATCATCAACAATATCATCATCAGAATAATATTAATAATACTAATGAGCAATTTCGTTATTATAATTTGCCGTCATTTTTCGCAACACCATCAACAATGTCGCCATCTTCTACTTCTAAGAATGTTGTTGTGCCTAGGGTTGGAGATTGTCCTCCTTTTGATAGGAACATGAGAGGGTCATAG 636 0.3915 MEKQEPSQPTNQGNEKKKHYRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALRFKGNKAKLNFPQLISNLPSDPTPPRNKNNASSSSSSSSQLAPPKPLNRSSSSSEEVFPNLMQYAQVLCSKDDEDLRRAASSLYNNNNHQQYHHQNNINNTNEQFRYYNLPSFFATPSTMSPSSTSKNVVVPRVGDCPPFDRNMRGS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo28g00010 211 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Mepo28g00010 211 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Mepo28g00010 211 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Mepo28g00010 211 MobiDBLite consensus disorder prediction 77 119 - -
Mepo28g00010 211 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Mepo28g00010 211 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Mepo28g00010 211 MobiDBLite consensus disorder prediction 1 34 - -
Mepo28g00010 211 PANTHER DNA-BINDING DOMAIN 10 142 IPR044808 GO:0003700|GO:0009873
Mepo28g00010 211 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Mepo28g00010 211 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Mepo28g00010 211 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Mepo28g00010 211 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo28g00010 1 148 AP2-EREBP Transcription Factor Family AT5G13330 46.497 5.03e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo28g00010 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo28g00010 - - tpra:123908943 267.7