Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo25g00036 ATGGGTAGGGGCAAAATCGAGATAAAAAGAATTGAAAATGCTAATAGCAGACAAGTTACATTTTCAAAGAGAAGAAGTGGTTTATTGAAGAAAGCTCAGGAGCTAGCTATTCTCTGTGATGCTGAGGTTGCTGTTATCATTTTTTCAAACACAGGAAAACTTTTTGAGTTTTCCAGTTCTGGTATGAAACGAACACTCTCAAGATACAACAAATGCACAGATTCTTCAGAGAGTGCATCAGTGGAATATAAAACAGAGATAATTCCGAAGGAAGATTCTAGGATGGTGGAGATTCTTAAAGATGAAATTGCAAAGCTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAGCTGGATTGGGAATAAAGGAACTGCAACATCTAGAGCAGCAAATTAACGAGGGACTATCATCCGTGAAGGAGAGGAAGGAGGAATTGCTCATGGAACAACTGGAGCAGTCTAGAATACAGGAGCAGAAGGCTATGCTGGAGAACGAAACTTTGCGGAGACAGATTGAAGAGCTTCGGTGCTTGTTTCCAATGACAGAACATGTTATGCCATCTTATCTTCAGTTTCACCATGTGGAAAGAAAGAACTCCTTTGTAGATAATGGTGTTAAGTGTCCCAGCTTGACTAGAAACTGCTCAGATGAGAAAGTTGATTCAGACACCACATTGCAATTAGGGTTACCATCTGATGTTCATCACAAGAAGAAGACTCCTGAGAAAAAGACCTTTTCCAATGATTTCATTGAATCAGATTGA 768 0.3945 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKTEIIPKEDSRMVEILKDEIAKLETNQLRLLGKDLAGLGIKELQHLEQQINEGLSSVKERKEELLMEQLEQSRIQEQKAMLENETLRRQIEELRCLFPMTEHVMPSYLQFHHVERKNSFVDNGVKCPSLTRNCSDEKVDSDTTLQLGLPSDVHHKKKTPEKKTFSNDFIESD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo25g00036 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Mepo25g00036 255 Coils Coil 152 179 - -
Mepo25g00036 255 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo25g00036 255 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Mepo25g00036 255 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mepo25g00036 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Mepo25g00036 255 MobiDBLite consensus disorder prediction 233 255 - -
Mepo25g00036 255 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mepo25g00036 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo25g00036 255 Coils Coil 126 146 - -
Mepo25g00036 255 Pfam K-box region 94 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo25g00036 1 255 MADS-box Gene Family AT5G13790 55.078 2.08e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo25g00036 K-box 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo25g00036 - - rcu:8259342 358.992