Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo20g00001 ATGGAAAAGAGGGAATTTTCTGATTTGCTGTCAACGCTGAAAGTTTTGGCCGATGAAGTTGTTTCGTTTGCCAAGAAAACTGAAATTGAGGTAGATGCTTTTTCTGAGTTTTCCATGTTGGTTGAGAAATTACTACCAATCTTGAACGAATTGAGTGGTAACAGCGTTGTATTGGACAAGCCATCAATTCAAAAATCGTTGGAATCTCTTGAGAATGAGCTACGGCGTGCTAAAGCTTTAACGAAAAGCTCGAATTTGAGACACCCTATTAAGCAAATCGAGGACATGACACATGATATCGGCCGGTCGTTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTGTCTATTGATTTTAGAGAAAAGATTGGTACATTGCAAAGACAGATGATGAATGCAAGATTTGACGGCAGTTCAAGTATTACTTCAAGTCCAAAATCAGAGTTTTTCATGAGTGAAACGAGGACGGTTGGTGAAATAGAAGAGGAAATAGTTCATGTTTCTATTGATGATGTGATTTTGCAACTTAAAAATGGCAATGATGAAGAATTTGCAGTTTCACTTATGAGACTAAAGGAGTTCATGAGAAGCGGAAATTTGGATGGTGGTTTGATTAACGAGGAAGCAACTATTGCCTTTCTTTTCAAGCGGTTAGTTTCATGTAAGGCAGACAATAGACTATCCATAATTCAATTGCTAAGAAGTATTGCTTTTGGAAACGATGAGAAAAAGGAGAAGATGGTTGAGGTTGAATTTTTATCAGCAGTGGTGAAGTCTCTTACAAGGGACTCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGACCTCTCTAACGTTCCAGCAGTTCGAAGGCGTATCGGAAGAATTCAAGGGTGTATCGTTATGTTGGTCGCCATCCTTAATGGTGATGACCCTGTTGCTTCACATGATGCAGCAAAGTTACTGGATATTTTGTCCAGTAATAATCAAAATGCACTTCATATGGCTGAGGCTGGTTACTTTAGGCCACTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCAACTGCACTTTCTCGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCGATTGAGCCCCTTGTGAAAATGTTTATTACCGGGAAACTTGAATCCAAGTTATCATCTCTAAACGCATTACAAAATCTGTCTAGCTTGACCGAAAACGTGCAACGTTTGATTCGATCAGGAATTACAGGATCTTTGCTACAACTTCTTTTCTCTGTAACATCTGTGCTCATGACACTAAGGGAGCCAGCATCAGCTATTCTTGCGCGAATTGCTCAGTCGGAATCCATTCTTGTCAACGAAGATGTTGCTCAACAGATGCTTTCGCTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATGTCTTCTCATCTTGGTGCATCCAAAGTGAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAACTACTCTTACCTTTTCTTAAGGAAAATAACATCAAAATCAGGTGTAAGGTCTTGAATTTGCTATACACACTCTCTAAAGATATGACCGATGAGTTAACTGAATATCTTGATGAAAGTCATATTTTCAACATTGTTAACATTGTCTCGTCATCCACATCAGAGAGTGAAAAGGCGGCTGCGGTTGGCATACTGAGTAATCTTCCCGCTAGCGATAAAAAAGTAACCGATATACTCAAGAGGGCTAATTTGCTCCAGCTTTTGATATCTATTTTGTATTCTAGCAATGCTAGTAAATCGCCATCAACAAACAGCTTAATCGAGAATGCTGCCGGTGTTATAAACCGCTTCACGAATTCATCAGACAAGAAACTACAACTTGTTTCGGTACAACATGGGGTGATTCCTTTGCTCGTAAAATTGCTCTCAACAAGTTCACCAATCACAAAATCAAGGGCTGCAAACTCTTTGGCACAGCTATCTCAAAATTCACTTTCTCTTAGGAAATGTAGAAAATCAAGATGGTTATGTGTTCAACCTTCAACGAACGCATATTGTGAAGTTCATGATGGATATTGCTTTGTCAATAGCACATTTTGTTTAGTCAAAGCCGGTGCGGTTCCACAACTTATCGAAATATTGGAAGATAAAGAGAAGGAAGCAGTTGAAGCTTCTCTTGTTGCACTTTCAACTCTCTTGCAAGATGAAATTTGGGAAAATGGTGTGAATTTCATTGCGAAATTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCATTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCAAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAATTAGAGCTTCTGCAAGCTCAATCAAGTTATTTTTGA 2484 0.3885 MEKREFSDLLSTLKVLADEVVSFAKKTEIEVDAFSEFSMLVEKLLPILNELSGNSVVLDKPSIQKSLESLENELRRAKALTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNARFDGSSSITSSPKSEFFMSETRTVGEIEEEIVHVSIDDVILQLKNGNDEEFAVSLMRLKEFMRSGNLDGGLINEEATIAFLFKRLVSCKADNRLSIIQLLRSIAFGNDEKKEKMVEVEFLSAVVKSLTRDSEERREAVGLLLDLSNVPAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAIEPLVKMFITGKLESKLSSLNALQNLSSLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKENNIKIRCKVLNLLYTLSKDMTDELTEYLDESHIFNIVNIVSSSTSESEKAAAVGILSNLPASDKKVTDILKRANLLQLLISILYSSNASKSPSTNSLIENAAGVINRFTNSSDKKLQLVSVQHGVIPLLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKCRKSRWLCVQPSTNAYCEVHDGYCFVNSTFCLVKAGAVPQLIEILEDKEKEAVEASLVALSTLLQDEIWENGVNFIAKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQAQSSYF 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo20g00001 827 SMART arm_5 362 402 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 321 361 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 623 663 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 403 446 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 573 620 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 488 528 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 695 735 IPR000225 GO:0005515
Mepo20g00001 827 SMART arm_5 239 278 IPR000225 GO:0005515
Mepo20g00001 827 Coils Coil 60 87 - -
Mepo20g00001 827 Gene3D - 198 485 IPR011989 -
Mepo20g00001 827 SUPERFAMILY ARM repeat 349 782 IPR016024 -
Mepo20g00001 827 Gene3D - 690 824 IPR011989 -
Mepo20g00001 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 172 827 - -
Mepo20g00001 827 SUPERFAMILY ARM repeat 169 423 IPR016024 -
Mepo20g00001 827 Gene3D - 486 671 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo20g00001 178 827 U-box Gene Family AT1G20780 27.948 4.29e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo20g00001 K08332 - gmx:100791453 1251.5