Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04665 ATGCCTCCAAAGACGCCAAAGAGAGGTTCAGCGGGTAGTGGTTCGAAGAGGGGTGGCAGATTATCGAGAGGAACTGCGAAATCTGCACAGAATCAACAACAGCAGCAATCTGAACCTGTTGAAGAGAAGACGGTGATTGAGGAAGAGATCAAGGTTGAAGAGAATCTCGTTGTTGAGGAAAAACCTGTGGTGGAAGAAGATAATCCTGTTGTTGAAGATAAAGCTATTGATATGAATCAAATTGCTCCTGAGGCTGTAGAAGATGCTAATTCAGCAAAAAAAGATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAGAGAGACGAGCGTCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGGGGGGTTGACTATGATGAGAAGGAAATTGAACAGGAAGAGGGACATGAGGTGGGAGATGAAGTTGAGGAAGAACCTGAAGAAAATGTTGGTGAAGAAGGTGATTCAGGTGAGGAAGAAGTCGAAGATGGTCATGATGAAATTGATGGAGAAGAGGATGACGAGCATGCTGATGAGGACCATGACCGTGAGCGTGCGGAGATGGCTGATGTGGATGAAGAGGAACATCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCGGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTGATGATGAATCCTCAGACAAAAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTTAAAAACCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCGAGTCAGGACAGCGATACCCTCTATTTGGGAAACATATGCAAAACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCATTCTTGGAGTTTTCCTCCCGCTCAGATGCAATGGATGCCTTTAAGAGACTGCAGAAGAGGGATGTTACGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCGCAGGTTAAAACTGTATTTATTGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGAAATCTTCTCAAGAAATATGGTGAGGTTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTGCTCGTAGAAAGGACTATGGATTTGTTACCTTTGGCTCACACGATGCTGCTATAAGATGTGCTGACAGCATTACTGGTACAGAATTGGGTGAAGGTGACAAAAAGGCCAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTATCGCCCGAGTCGCGGATCTGCAATAATGTCAAGGCCTTCTTGGAGCAGCCGTCCTGCACCCCGTAGTTTCTCGTCGCGTGGGGTAAGAGGAATTGGAAGTCGTGCTCCGCCAATCAGGTCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTATACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGATGCTGCATATTCAAAAAGCAGCGTAAAGAGAGATTATGGTCGGCGTGATGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCTAGGATGACCTCTGAAAGACGCCCAACTTATAGGGATTATCCACCCCGTGGATCTGACTACTCTGATCTCCCTAGAAGTACAGCTCGTGCTGCACCTAGGAGAGGTTACGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCACCTCCTCCTCCACCCCCTTCCCATCCAAGTTATCGTGAAGGACGCCCTCGTGATTATGATTCTCTATCTGGCTCAAAACGTTCTTACGCTGCCGTGGATGATGTTCCCCCAAGATACGCCGATACTGGTGCTCGTCAATCAAGAGCTCGATTGGAGTATGACTATGGTGGCAGTGCTTCACAGTATGGTGATGCTTATGGTGATAGAGTTGGAAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACACGGGGTGTATAGCAGTCGGCAGGGCATGAGTTATGGTGGAGGCTCTTATGGCAGTAGTGATGTTGGAGGCATGTACTCATCAAGTTATGGCGGTGATTACGTTTCTCGTGGAAATGATGTTGGCGGCAGCTCATATTCATCAATGTATTCTGGCAGGGGTGCGGGTGGCGGTAGCAGTTACATGGGCAGCGGTGGTTCGGGATCTTATTATTGA 2403 0.4598 MPPKTPKRGSAGSGSKRGGRLSRGTAKSAQNQQQQQSEPVEEKTVIEEEIKVEENLVVEEKPVVEEDNPVVEDKAIDMNQIAPEAVEDANSAKKDEEEVKESIDEYERDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEPEENVGEEGDSGEEEVEDGHDEIDGEEDDEHADEDHDRERAEMADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAIMSRPSWSSRPAPRSFSSRGVRGIGSRAPPIRSISARDRRPVMSIPVRSRPLPPPARSYDRRPADAAYSKSSVKRDYGRRDDLPPPRSRVAADYGSRMTSERRPTYRDYPPRGSDYSDLPRSTARAAPRRGYVDDGYSQRYERPPPPPPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGVYSSRQGMSYGGGSYGSSDVGGMYSSSYGGDYVSRGNDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04665 800 MobiDBLite consensus disorder prediction 496 510 - -
Mepo1g04665 800 SUPERFAMILY RNA-binding domain, RBD 295 459 IPR035979 GO:0003676
Mepo1g04665 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 379 IPR000504 GO:0003723
Mepo1g04665 800 Coils Coil 89 112 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 716 736 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 774 800 - -
Mepo1g04665 800 Gene3D - 142 295 IPR012677 -
Mepo1g04665 800 Gene3D - 296 378 IPR012677 -
Mepo1g04665 800 Gene3D - 382 499 IPR012677 -
Mepo1g04665 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 474 IPR000504 GO:0003723
Mepo1g04665 800 MobiDBLite consensus disorder prediction 108 184 - -
Mepo1g04665 800 CDD RRM_SF 394 468 - -
Mepo1g04665 800 CDD RRM_SF 297 364 - -
Mepo1g04665 800 FunFam RNA recognition water-stress protein1 382 503 - -
Mepo1g04665 800 CDD RRM_SF 217 288 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 558 582 - -
Mepo1g04665 800 FunFam Heterogeneous nuclear ribonucleoprotein Q 296 378 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 88 107 - -
Mepo1g04665 800 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 147 295 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 63 206 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 473 685 - -
Mepo1g04665 800 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 36 800 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 185 206 - -
Mepo1g04665 800 MobiDBLite consensus disorder prediction 1 46 - -
Mepo1g04665 800 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Mepo1g04665 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 363 IPR000504 GO:0003723
Mepo1g04665 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Mepo1g04665 800 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 459 IPR000504 GO:0003723
Mepo1g04665 800 MobiDBLite consensus disorder prediction 24 40 - -
Mepo1g04665 800 SMART rrm1_1 393 468 IPR000504 GO:0003723
Mepo1g04665 800 SMART rrm1_1 216 289 IPR000504 GO:0003723
Mepo1g04665 800 SMART rrm1_1 296 375 IPR000504 GO:0003723
Mepo1g04665 800 SUPERFAMILY RNA-binding domain, RBD 210 293 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04665 Mepo-Chr1 54500777 54507139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04665 217 458 Eukaryotic Initiation Factors Gene Family AT4G34110 23.622 1.32e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04665 - - gmx:100779340 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04665 1 54500777 54507139 Mepo1g04665 1 54500777 54507139 ECH
Mepo1g04665 1 54500777 54507139 Mepo3g00143 3 2058329 2069847 PCT