Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04617 ATGCACAACAACAATAACACATCAACAACTTTTTCACCTTTCTCTCTCTCTAAACCTTCCTCTCTTCACAAAAACGTCGTCGTTATGGATAATACATTTACACCACCGTCACCACACCGTTCATCTCCGTTACAAAACATAAGCCCTAGCATTCTCATCATAATAACAATCCTCGCCGTCACCGTCATCGTTTCTCTTCTAATCTGTTTCCTCCTCCGCCACCTCAACTGTCACCGTCTCCGCCGTGATCCATCTCCAACAACCACCGAACCTCCTCCTCACACTCACAGCCGCCGTATCTCTCCAGAAACAACACCTCCTTCCGTCATCGACTCACTTCCCTTATTCACATTCTCATCCATTTCACGCCGTTCCTCCGCCGTCACCGCCGCTGACTGCGCCGTATGTTTATCAAAGTTCCGTAACTCCGACCTCCTCCGTTCTCTTCCTCTCTGTTGCCACGCTTTTCATGCCGAATGCATTGACACATGGCTCCGTTCGAATCTTTCATGTCCGTTATGTCGCTCCAGCATTCTCCCTTCCGATTCTGATCTCGCAAAAATTCTCCGATCAACTTCTTCAGACAGTTTCCGAGTTGATATAGGAAATATAAGCCGGCGTGGAAACAATCTTCCCAATCCCGACGCCGTCACCACCGGCGGTGATTCAAGGTCTTATTCTATTGGATCGTTTGAGTATTATGTAGTTGAGCCTTCAGAGGTTTCGTTTACGCAAGATCACCGGAGAAGTGTTTCCGATCAGAAGGACATTCACATTCCGGTATCGGAGGATTCATCTATGACAAATGAAAATACTATCGCCGGTGAAGTTGCTGGAAGTGGACATTGGTTGAAGGATTACGTGGACAGACTATCTGCTTCGATTTCATCGCGAACAGCGTCGTTTCGGAGTTCTGGAAGATTCTTCGCCGGAGGTGGAAGTAGTCGGAGGATTGAACCGGTTGATTATGATGTGGAAGGTAACAGAATTGGTGTAGAGATTAGTGAGATGTTTCGGTGGCTTTCAGGGGTATAA 1035 0.4725 MHNNNNTSTTFSPFSLSKPSSLHKNVVVMDNTFTPPSPHRSSPLQNISPSILIIITILAVTVIVSLLICFLLRHLNCHRLRRDPSPTTTEPPPHTHSRRISPETTPPSVIDSLPLFTFSSISRRSSAVTAADCAVCLSKFRNSDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRSSILPSDSDLAKILRSTSSDSFRVDIGNISRRGNNLPNPDAVTTGGDSRSYSIGSFEYYVVEPSEVSFTQDHRRSVSDQKDIHIPVSEDSSMTNENTIAGEVAGSGHWLKDYVDRLSASISSRTASFRSSGRFFAGGGSSRRIEPVDYDVEGNRIGVEISEMFRWLSGV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04617 344 CDD RING-H2_EL5-like 132 175 - -
Mepo1g04617 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 180 IPR013083 -
Mepo1g04617 344 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Mepo1g04617 344 Pfam Ring finger domain 132 175 IPR001841 -
Mepo1g04617 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 245 - -
Mepo1g04617 344 FunFam E3 ubiquitin-protein ligase ATL6 94 181 - -
Mepo1g04617 344 SUPERFAMILY RING/U-box 109 181 - -
Mepo1g04617 344 SMART ring_2 133 174 IPR001841 -
Mepo1g04617 344 MobiDBLite consensus disorder prediction 92 107 - -
Mepo1g04617 344 MobiDBLite consensus disorder prediction 82 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04617 Mepo-Chr1 54045659 54046925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04617 96 188 C3H Transcription Factor Family AT3G18930 47.000 8.67e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04617 K10663 - gmx:100776516 310.071