Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04546 ATGGAGGAAAAAATCATAGAACACAAAAGTGTTACCACAAAGCTTGTAAAGTCTAGTTTCATGTCTTCTTTGCCAAAAAGTGTTACAATCTCATTTACTGATAACTATGCCACTGACTCTTCAACTGAAGATGAAGAACAACATGTAATAACAACAAGGAAAATAGTGAACGAGGTAAGATTTCAACAATGTTCCACTTTTTCAAACAAGAACAACAAAAAGAGACATGAAGAGATAGAAAACAAGAATGCTGTTGGTGTTGGTCAATGTTGTTTGGAACAAAACAATGAGAACCCTAGACAAATAAATGATGTTGTTCATCAAAAGTTTCGTGGCGTTCGACGACGACGGCGGGGGAGATTTGCTGCTGAGATTCGTGATCCTCGGCTTGGAAGGAGAAGATGGTTAGGGACTTATGATACTGCTGAAGAAGCTGCTTTGGTTTACGATCGAGCTGCAATTGATTGTAGAGGTGCTGATGCTGTTACAAATATCATCAAACCACCACAGAAGAGAAAATCAGTGAAAGATGAATTTGTTTGTGACAAAAATGGATATTATGGTGATAATGTTTCTGTTGAGGATTGTAATGGTAGTTCATCTTATTCTCAAGAATCTGTGAGTGAAATTTGGAGTGAAAGGATGAATGATCAAGAATGGATAAAAGAGATAACTGGAGAGGAATATTTGGATGATGGTTTTACATTTGTTGATGATTCATATGGTTCTTGTTCTTATTATGAACCTGTTCTTCCTACAATGGTTTCTAATGAGAGTGATTGCATTGTTGATACTATTCCTTTTCATCTTGAGGAGGATTTTGAATCATGTGAATGGGAGGTTAATAATTACTTCAATGAATCTTTGGAGTTTTGA 876 0.3596 MEEKIIEHKSVTTKLVKSSFMSSLPKSVTISFTDNYATDSSTEDEEQHVITTRKIVNEVRFQQCSTFSNKNNKKRHEEIENKNAVGVGQCCLEQNNENPRQINDVVHQKFRGVRRRRRGRFAAEIRDPRLGRRRWLGTYDTAEEAALVYDRAAIDCRGADAVTNIIKPPQKRKSVKDEFVCDKNGYYGDNVSVEDCNGSSSYSQESVSEIWSERMNDQEWIKEITGEEYLDDGFTFVDDSYGSCSYYEPVLPTMVSNESDCIVDTIPFHLEEDFESCEWEVNNYFNESLEF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04546 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 176 - -
Mepo1g04546 291 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Mepo1g04546 291 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Mepo1g04546 291 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Mepo1g04546 291 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Mepo1g04546 291 Pfam AP2 domain 109 154 IPR001471 GO:0003700|GO:0006355
Mepo1g04546 291 CDD AP2 121 164 IPR001471 GO:0003700|GO:0006355
Mepo1g04546 291 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Mepo1g04546 291 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04546 Mepo-Chr1 53223296 53224171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04546 4 201 AP2-EREBP Transcription Factor Family AT4G27950 36.538 7.62e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo1g04546 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04546 - - mtr:25500226 547.354