Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04408 ATGGAAAACCGTCAAAGAATAACACTTTACGATCAAATGACATCCACAAGCAACACTAGAAGCTCACTAGCTAGTTTAATCCAAAACGAAGCCGTTTTATCCAACCAAAAAAACACAAACCAAACACTCTTAGATATTATACGAGAAAACGAACCAAACAACGTTGTTGTTAATGTTGTCAACAACAACAACAACGTTGTTAAAGATCGAAAATCATGGAAAGCTTTTAAGGAATTGCTACTATTCAAACGTCGTAACTCGGATGAATCAACTCACCAACAACAAAACGAGGATATTCCGACCAATTCAGATCCGTCGGAGTTTCTTCCCGGCGGCGAGTTTTCCGATGAGACGGCACAGGTTAGCATGTCATTGATGGATTTGTTGGAAGAGAGTGAAATTGAATTGGAACGAAGTAGTGAGGTTGATGAGGTGGAAGAGAAACAAGAACATGAAGAAGAAAAAGAAGAAGAAAGAGAAGAAGAAGAAGGAGAAGGGAGTAATGTTAAGGTGGAACACAATTGTTGCGTGTGTATGGTAAGGGATAAAGGTGCAGCGTTTATACCATGTGGACACACGTTTTGCAGAATGTGTTCGAGAGAGCTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATTTTAGAAGTTCTTGATATTTTCTGA 672 0.3899 MENRQRITLYDQMTSTSNTRSSLASLIQNEAVLSNQKNTNQTLLDIIRENEPNNVVVNVVNNNNNVVKDRKSWKAFKELLLFKRRNSDESTHQQQNEDIPTNSDPSEFLPGGEFSDETAQVSMSLMDLLEESEIELERSSEVDEVEEKQEHEEEKEEEREEEEGEGSNVKVEHNCCVCMVRDKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04408 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 223 IPR013083 -
Mepo1g04408 223 SMART ring_2 175 212 IPR001841 -
Mepo1g04408 223 SUPERFAMILY RING/U-box 174 219 - -
Mepo1g04408 223 PANTHER OS01G0917900 PROTEIN 4 99 - -
Mepo1g04408 223 ProSiteProfiles Zinc finger RING-type profile. 175 213 IPR001841 -
Mepo1g04408 223 MobiDBLite consensus disorder prediction 146 163 - -
Mepo1g04408 223 CDD RING-HC 175 212 - -
Mepo1g04408 223 MobiDBLite consensus disorder prediction 135 166 - -
Mepo1g04408 223 Pfam Zinc finger, C3HC4 type (RING finger) 172 217 - -
Mepo1g04408 223 Coils Coil 141 168 - -
Mepo1g04408 223 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04408 Mepo-Chr1 51680245 51681249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04408 3 223 C3H Transcription Factor Family AT3G25030 36.437 3.88e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04408 - - cam:101511225 254.218