Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04389 ATGGAAGCACAAGATTACTTTGTCGGTGGCTACTACGGTGCCGGCGAAAACCAATTCTCGCCGGAGAAACGTCACGGTGACCAAAAACCACCGTGTGAGCCTTTCGCCATTGATGATTTACTTGATTTCTCCAATGCTGATGTGATTATGTCTGACGGTTTCTTCGATAACAATGTCGCCGGAAATTCCACCGACTCTTCCAATGTCACCGCTGTTGACAGCTGTAACTCGTCTGGCTCTGGTGGTGATAACCGCTTTGGAGGCACAATTGTTCCGTATGGTTTTTCCGGTGATGTTCAACTCACCGGAGAACTCTGTGTTCCGTATGATGATATGGCGGAACTGGAATGGCTTTCGAATTTCGTTGAAGATTCATACTCCGCTGAAGAAGAATTGAAAACTTTGCAACTTCTCTCCGGGGCCGGTGCAGTTAAACCACAAACACCGGAATCTTCATCTTCCACCGACACACTTCCGTCATTTTCCACCGACGAAACTGCTCGTAACGCTTCATTTCTCCGTCCGGAAACACCTCTACCAGGAAAAGCACGTAGCAAACGCTCACGCGCTGCTCCAGGAGACTGGTCCACGCGCCTACTGCATCTCCCCGACGCGCCGCCGAAGAATTATCCAATCGTGAAGAAGCGTGAGGATCCAAATGTGGAATGTTCTGGAAGAAAATGTCTCCACTGCGGCACGGATAAGACGCCGCAGTGGAGAACAGGACCGATGGGACCGAAAACACTCTGCAATGCGTGTGGTGTGAGGTTTAAGTCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCGAGTCCAACTTTTGTATCAGCGAAGCATTCGAATTCTCATAGGAAAGTTTTGGAACTTCGAAGACAGAAAGAGATGCAAAGATCATCACAGCATCATCATCAACATCAACAGCTTCTGAGTCACAGTTCAATTTTCGGCGTTTCATCTAACGGTGGAGATGATTTCATCAATTATCATCATCATCATTGTGGGCCAGAGTTTAGACATGTTATCTAG 1026 0.4844 MEAQDYFVGGYYGAGENQFSPEKRHGDQKPPCEPFAIDDLLDFSNADVIMSDGFFDNNVAGNSTDSSNVTAVDSCNSSGSGGDNRFGGTIVPYGFSGDVQLTGELCVPYDDMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTLPSFSTDETARNASFLRPETPLPGKARSKRSRAAPGDWSTRLLHLPDAPPKNYPIVKKREDPNVECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSSQHHHQHQQLLSHSSIFGVSSNGGDDFINYHHHHCGPEFRHVI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04389 341 MobiDBLite consensus disorder prediction 143 213 - -
Mepo1g04389 341 PANTHER GATA TRANSCRIPTION FACTOR 30 300 - -
Mepo1g04389 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 285 - -
Mepo1g04389 341 FunFam GATA transcription factor 218 305 - -
Mepo1g04389 341 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Mepo1g04389 341 PIRSF Txn_fac_GATA_plant 22 317 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo1g04389 341 MobiDBLite consensus disorder prediction 145 170 - -
Mepo1g04389 341 CDD ZnF_GATA 227 274 IPR000679 GO:0006355|GO:0043565
Mepo1g04389 341 Gene3D - 223 308 IPR013088 GO:0006355|GO:0008270
Mepo1g04389 341 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Mepo1g04389 341 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Mepo1g04389 341 SMART GATA_3 222 272 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04389 Mepo-Chr1 51537471 51538847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04389 33 341 C2C2-Gata Transcription Factor Family AT4G32890 48.297 1.09e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo1g04389 GATA 6.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04389 - - cam:101510199 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04389 1 51537471 51538847 Mepo1g04389 1 51537471 51538847 ECH