Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04388 ATGGCCTGCAAGGATGGTAATAAGCACTTAATGGATAATGGAAAGTATGTACGTTATACACCTGAGCAGGTTGAAGCTCTTGAAAGGCTTTATCATGAATGTCCTAAACCAAGTTCAATTCGAAGACAACAACTTATTAGAGAATGTCCTATTCTTTCTAATATTGAACCAAGGCAAATCAAAGTTTGGTTTCAGAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAGTCTTTCAGGTTGCAAGGTGTGAATAGGAAGTTGACAGCCATGAATAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCACCTGGTGTATGAGAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGTGAGTCAGTGGTGACTAGTGGTCAGCACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTCGCTATTTCTCATGGTTGCACTGGTGTCGCAGCAAGAGCTTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCGGAAATCCTAAAAGATCGTCCTTTGTGGTTTCGTGATTGCCGAGCTGTTGATATTGTCAATGTGCTGCCCACTGCTAATGGTGGAACTATTGAGCTGCTTTATATGCAGCTTTATGCACCAACCACATTGGCACCTGCTCGCGACTTCTGGTTGTTACGCTACACTTCTGTTGTGGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCTAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGGTACCTGATAAGGCCTTGCGAAGGAGGTGGTTCCATTATCCACATTGTTGATCATATGGACTTGGAGCCATGGAGCGTTCCAGAAGTACTGCGTCCACTTTATGAATCACCGATGGTGCTGGCTCAGAAGACTACTATGGCGGCTTTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGCCCAATGTCACTGGGTGGGGAAGACGACCAGCAGCTCTGCGGGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACTGATGAAGGATGGACAATGATGGGCAATGACGGTGTTGATGATGTCACTATTCTAGTAAATTCATCACCTGACAAGTTAATGGGTTTGAATCTTTCCTTTGGCAATGGATTTCCTTCTGTCAGTAATGCTGTGTTATGTGCCAAGGCATCAATGCTATTACAGAACGTGCCTCCAGCCATTCTCCTAAGGTTCCTGCGTGAACATAGATCAGAATGGGCAGACCATAATATGGATGCTTACACAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTAACAGGATCTCGCGTAGGAAATTACGGGGGTCAAGTGATACTCCCGCTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTTATTAAGCTGGACGGAGTTGCCCATTCTCCTGAAGAAATGATGGCCAGAGAATTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCTTTTGCTGATGATGCCCCTCTTCTACCCTCTGGATTTCGTATCATCCCTCTTGAATCTGGAAAAGAATCGTCCAGTCCTAATCGCACTCTTGATCTTGCATCTGCCCTTGACATTGGCCCTACTGGAAACCGAGCATCAAGTGATAATGCTGGAAATTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATATGAAAGTCATATGCAAGAGAATGTAGCATGCATGGCACGCCAATATGTTCGCAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTAATCTGAGTTCACATGGTGGGCTGAGGTCACCGCTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGATGCTACTTAGGCGTGGAGCTACTTAAATCTAATACTGAAGGAAAAGAATCTGTACTCAAGTCCTTGTGGCACCACTCTGATGCTGTATTATGCTGCACTCTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACGCTAGTTGCATTACAAGATATAAGTCTGGAGAAAATATTTGATGATAATGGTCGAAAAACTCTCTTTTCAGAGTTCCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATTTGTCTCTCAAGCATGGGACGACCTGTCTCATACGAGAGAGCTGTTGCTTGGAAAGTGCTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2499 0.4458 MACKDGNKHLMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPMVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADHNMDAYTAAAIKVGPCSLTGSRVGNYGGQVILPLAHTIEHEEFLEVIKLDGVAHSPEEMMARELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKESSSPNRTLDLASALDIGPTGNRASSDNAGNSGCVRSVMTIAFEFAYESHMQENVACMARQYVRSIISSVQRVALALSPSNLSSHGGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNTEGKESVLKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDISLEKIFDDNGRKTLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERAVAWKVLNDEQNAHCICFMFVNWSFV 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04388 832 ProSiteProfiles START domain profile. 146 360 IPR002913 GO:0008289
Mepo1g04388 832 Pfam MEKHLA domain 689 831 IPR013978 -
Mepo1g04388 832 Pfam START domain 156 364 IPR002913 GO:0008289
Mepo1g04388 832 CDD homeodomain 15 75 IPR001356 GO:0003677
Mepo1g04388 832 Coils Coil 84 104 - -
Mepo1g04388 832 CDD bZIP 67 106 - -
Mepo1g04388 832 Gene3D - 8 79 - -
Mepo1g04388 832 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Mepo1g04388 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 832 IPR044830 GO:0003700
Mepo1g04388 832 CDD START_ArGLABRA2_like 150 365 - -
Mepo1g04388 832 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Mepo1g04388 832 SUPERFAMILY Bet v1-like 155 365 - -
Mepo1g04388 832 SMART START_1 155 365 IPR002913 GO:0008289
Mepo1g04388 832 SMART HOX_1 12 78 IPR001356 GO:0003677
Mepo1g04388 832 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
Mepo1g04388 832 FunFam homeobox-leucine zipper protein ATHB-15 191 372 - -
Mepo1g04388 832 Gene3D - 190 369 IPR023393 -
Mepo1g04388 832 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04388 Mepo-Chr1 51502392 51509562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04388 1 784 Homeobox Transcription Factor Family AT1G52150 83.291 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo1g04388 START 1.4e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04388 K09338 - gmx:100800165 1555.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04388 1 51502392 51509562 Mepo1g04388 1 51502392 51509562 ECH
Mepo6g04168 6 53826567 53834940 Mepo1g04388 1 51502392 51509562 PCT