Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04359 ATGTGGCAAAGAAGCCACAAGTGTTCTTTAGAGGAGAGGAAATTGGAGCTTAGACTTGGTCCACCTGGTGAAGAAGAAATTGTCAATGAAAAAAGCATGAAGAATGTCAAAAAAGAAAGAGATGAAGAATCATCACTCACTCTTGGTTATGCTAAAGATTCATCATTTCTTAAGCTCTCATCAATGCAAGTGATGGAAAAGGATGCATCACAATCACAACCTTGTTGCACAAACTTGCAGGATGGTGAGAAAAATGCATTCTCTCCTTCTGCAAGAAATTCAGCTTTACCAAACAGGTCTCAGAAAAGAAATGCTGCTAGTCCAGTAGTAGGTTGGCCTCCGATTCGTTCATTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCCGCCAACCGAGTCCCGGCCTATGGTTCAAGACAAGGTTATTGTTGATAGTAACAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCTATTGGGAGAAAAATTGACATCAATGCTTATGATGGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGCCTCCTTGAAGAGATAAATTTATCTCATGGAGTTAACAAGAAGCAAGAGGAAGAAGATAAAGGCATCAAAGGATCATTGACTGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCATATGTTTGTATCAACAGTGAAGAGGCTGCGTGTGTCCAAGAGTTCTGATCTTCCTGCTTTTAACCTTGGTAGCAAGAAAGACTAG 819 0.4042 MWQRSHKCSLEERKLELRLGPPGEEEIVNEKSMKNVKKERDEESSLTLGYAKDSSFLKLSSMQVMEKDASQSQPCCTNLQDGEKNAFSPSARNSALPNRSQKRNAASPVVGWPPIRSFRKNIASGSSSKPPTESRPMVQDKVIVDSNKPISNSGKGLFVKINMDGVPIGRKIDINAYDGYEKLSSAVDDLFRGLLEEINLSHGVNKKQEEEDKGIKGSLTGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNLGSKKD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04359 272 Pfam AUX/IAA family 15 262 IPR033389 -
Mepo1g04359 272 Gene3D - 151 270 - -
Mepo1g04359 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 261 IPR003311 GO:0005634|GO:0006355
Mepo1g04359 272 MobiDBLite consensus disorder prediction 64 112 - -
Mepo1g04359 272 FunFam Auxin-responsive protein 151 270 - -
Mepo1g04359 272 MobiDBLite consensus disorder prediction 26 45 - -
Mepo1g04359 272 SUPERFAMILY CAD & PB1 domains 149 257 - -
Mepo1g04359 272 ProSiteProfiles PB1 domain profile. 156 259 IPR000270 GO:0005515
Mepo1g04359 272 MobiDBLite consensus disorder prediction 64 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04359 Mepo-Chr1 51234104 51237780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04359 159 256 B3 DNA Binding Superfamily AT4G23980 35.714 2.05e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo1g04359 AUX_IAA 4.6e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04359 K14484 - gmx:100793822 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04359 1 51234104 51237780 Mepo6g04154 6 53634761 53638975 ECH
Mepo1g04359 1 51234104 51237780 Mepo1g04359 1 51234104 51237780 ECH
Mepo6g04154 6 53634761 53638975 Mepo1g04359 1 51234104 51237780 PCT