Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04330 ATGGATGGTCTAAATTGGGATGGCTCACAACTTCAAGAGAACACACCAATCTTGTGGAGTACTCAACAATTTGAAGAAGGCTACAACATATCAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTCAAATTGGTAACACATATTCAAATTCTGAAAGATTGATTCCAAACACAAATCTTTCACAGCATGCAACAAACATGAAAGTGAAATCAAAAGCTGGATCCAGCTGGAGAGAAGAACCTTTAATACCTCAATCATTTCAGTCCTTTTCAGACAGTAGACCTTACAACATTATGCCAGATTTCAACATGGCCCACCAACAACAAAAACTCAACAACTCTTTTGAGTCTTTTGATTGTTTGCTTTCAGGTACTAACAGTAACACAGACAATTCTGTTGAAAATGATAATGATGGAATTTCAAAGCTATTTTCTGATTGCAAAAACTTATGGAACTTCAGCTATGTCAGTAATACAGCAACCTCCTCAGGTGAAACTGATAGTAATGTTTCAAACAGTACAAGCTACGAAGCACTGACACAAACACGGACGCGGACACCAGACACGCCTTCGATCAGAAGTGTCAGTGTTACAGACAGTACTCGAAACAAAAACATTCATTGTCCACTCAATGAATTTGATGAAACAATCTCTCAAAGTTCCTCAGATCAATACATCCATCCAAGAAAGGCAATACAATCAAGTACTATTCATAATTCTTCACCTGTTGAAGGTGGTTTTAGACTTATCACTGATAAGCCACCAAAATGCAAGAAACCAAGATGTGATAAGGGACCTTGTTCAACTAATATTAATTTTCAACAACCAAATTCATCATCAATGTGTTGTTCTTCTTCAATTGAAGAAGCTGATCCAGAAGCAATAGCACAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGACCAGTGAATTTTGGAATGGATGATATCGACGTAATCGAAAAAAAGCCTAAGAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTTGCTGCAAGACATAGAAGGGAAAGAATAAGTGAAAGAATTAGGGTTTTGCAAAAGATTGTACCTGGTGGAAGCAAAATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTTTTAAGGTCACAGGTTAAAGCACTTGAAACTTTAGGTAACAAAGTTAATGCTATGGATTGTAATCCAACTAGTATTGCTTTCTCTTTTAACCCTTCTTTTCCCATGCAAATGATCCCTAGTAATCACAATCCTCATTCACAGGGTTGA 1293 0.3658 MDGLNWDGSQLQENTPILWSTQQFEEGYNISNSLTHQIQEMHKVQIGNTYSNSERLIPNTNLSQHATNMKVKSKAGSSWREEPLIPQSFQSFSDSRPYNIMPDFNMAHQQQKLNNSFESFDCLLSGTNSNTDNSVENDNDGISKLFSDCKNLWNFSYVSNTATSSGETDSNVSNSTSYEALTQTRTRTPDTPSIRSVSVTDSTRNKNIHCPLNEFDETISQSSSDQYIHPRKAIQSSTIHNSSPVEGGFRLITDKPPKCKKPRCDKGPCSTNINFQQPNSSSMCCSSSIEEADPEAIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALETLGNKVNAMDCNPTSIAFSFNPSFPMQMIPSNHNPHSQG 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04330 430 MobiDBLite consensus disorder prediction 180 199 - -
Mepo1g04330 430 Pfam Helix-loop-helix DNA-binding domain 344 383 IPR011598 GO:0046983
Mepo1g04330 430 Coils Coil 373 393 - -
Mepo1g04330 430 Gene3D - 339 401 IPR036638 GO:0046983
Mepo1g04330 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Mepo1g04330 430 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 128 419 IPR045843 GO:0003700|GO:0006355
Mepo1g04330 430 SMART finulus 340 389 IPR011598 GO:0046983
Mepo1g04330 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 393 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04330 Mepo-Chr1 50729294 50731147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04330 109 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.273 3.33e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g04330 HLH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04330 - - psat:127076443 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04330 1 50729294 50731147 Mepo1g04330 1 50729294 50731147 ECH