Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04260 ATGGTAAAAGGTTTGATGATGTTTCAACAGCAACAAGTAGTGGAAGAAAACATGTCAAACTTAACTTCTGCATCTGGTGAAGCTAGTGTTTCTTCTGGTAACAGAACTGAAATTGGTACAGGTAGTAGTTACCCTCAAACTCAACAAGTTCAACAACAATACTTGGTTCCTCCAACACAATCTCAAACTCAACCAATGAAAAAAAAGAGAAATCTCCCTGGTAACCCAGACCCTGATGCTGAGGTTATAGCTATGTCACCAAAGAGTTTACTAGCAAAAAACAGGTTCATATGTGAGATCTGTAACAAAGGCTTTCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGTCACAATTTACCATGGAAGTTGAAGCAAAGAACAAGTAAAGAGATTAGAAAGAAAGTTTATGTGTGTCCAGAACCAACTTGTGTGCATCATGATCCATCAAGAGCATTAGGGGATTTGACTGGAATCAAGAAGCACTTTTCCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACATGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTCATAACACATAGAGCATTTTGTGATGCATTGGCAGAAGAGAGTGCAAGAGCTATGACAAATAATGCAATGCCAATTTTACCCTCACAACCTTCATCATCATCTTCTCATCATCACATGATAAATCTACAAAACCAATTCAATAATCCTCAACAAGATCTTCATAATTTCCCATTATTGAAAAAAGAGCAACATAATCAAAGTTTTAACCTTTCTGAAATTCCACCTTGGCTTGGCCCACATAATGTTGATAATCTCTCATCATCATCATCAATATTTTCTCAAAGTAATCAATTTTCATCACAAACACAACATCATCAAGAAAACCCTAACCCTAGTCTTGTTCATGTTCCTGGACCCACACTCCCTTCTTACCAAACAGTACCTTCAGCACACATGTCAGCTACTGCATTGTTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAATAGAACTGGTTCTGCTTCTTCACCAGCTATGAATAATATTAAGACCCACCAAGTTGATTCTCTCAATAATGTCTCTGGTAATTTTGGTTTGAATTTGTTGTCATCATCACAAGAACAACAACAACATCAACAAAGCACACAAGAAAATACCACTACTTCAACATATCTTAATAATATTCATGATGTTATGTTTTCTTCTTCTTCATCTCCTTCTGGATTTGAAGCAACCCAATTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATCAAAACTTGCATGATGAAAAAGTAACCTCTAAAACAACCACCAATGACGGTGGCGGCAGCGGCGGAGGTGGTGGAAATGAAGGTTTGACAAGAGATTTCTTGGGGCTTAGGCCATTGTCACATAGTGATATTCTAAGTATTGCAGGGATTGGAAACTGCATGAATGATCAACAACAACAAAATCAATCTCAAAAGCCATCATGGCAAGGTTAG 1572 0.376 MVKGLMMFQQQQVVEENMSNLTSASGEASVSSGNRTEIGTGSSYPQTQQVQQQYLVPPTQSQTQPMKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNAMPILPSQPSSSSSHHHMINLQNQFNNPQQDLHNFPLLKKEQHNQSFNLSEIPPWLGPHNVDNLSSSSSIFSQSNQFSSQTQHHQENPNPSLVHVPGPTLPSYQTVPSAHMSATALLQKAAQMGATMNRTGSASSPAMNNIKTHQVDSLNNVSGNFGLNLLSSSQEQQQHQQSTQENTTTSTYLNNIHDVMFSSSSSPSGFEATQFDEMFGGIMNSKKDQNLHDEKVTSKTTTNDGGGSGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQQQNQSQKPSWQG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04260 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Mepo1g04260 523 SUPERFAMILY beta-beta-alpha zinc fingers 95 192 IPR036236 -
Mepo1g04260 523 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Mepo1g04260 523 MobiDBLite consensus disorder prediction 301 323 - -
Mepo1g04260 523 FunFam protein indeterminate-domain 12-like 75 143 - -
Mepo1g04260 523 Pfam Zinc-finger double-stranded RNA-binding 96 118 IPR022755 -
Mepo1g04260 523 MobiDBLite consensus disorder prediction 20 69 - -
Mepo1g04260 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 508 IPR031140 -
Mepo1g04260 523 FunFam protein indeterminate-domain 5, chloroplastic-like 150 229 - -
Mepo1g04260 523 MobiDBLite consensus disorder prediction 20 81 - -
Mepo1g04260 523 MobiDBLite consensus disorder prediction 451 486 - -
Mepo1g04260 523 MobiDBLite consensus disorder prediction 301 339 - -
Mepo1g04260 523 Gene3D Classic Zinc Finger 77 142 - -
Mepo1g04260 523 Gene3D Classic Zinc Finger 150 230 - -
Mepo1g04260 523 SMART c2h2final6 137 167 IPR013087 -
Mepo1g04260 523 SMART c2h2final6 172 192 IPR013087 -
Mepo1g04260 523 SMART c2h2final6 96 118 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04260 Mepo-Chr1 49950533 49953402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04260 14 508 IDZ Gene Family AT1G55110 48.919 1.94e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g04260 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04260 K25870 - gmx:100808344 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04099 6 53184943 53187731 Mepo1g04260 1 49950533 49953402 PCT