Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04255 ATGATGGCACATCACTCTTGCTGTAGCAAGGAGAAGGTCAACAGAGGACTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATACATCACAACTTATGGACAAGATTGCTGCTGGAGTTCTGTTCCAAAACTTGCTGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATGAAGAAGTAGCACTCATTATTGAACTCCACAGCATTCTAGGCAATAGATGGGCACAAATTGCCAAGCACTTACCAGGTAGAACGGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAAAAACTCCTTTCTGGTGATATTGTTCCATCCTTCACCACATTTTATGATATTCACCTCCCCTACAATGCTGGTTTTAAGGAAAGTTTTTTTCCTTTAAATGCAAACCCTAATGTGATGCTAAACTTCAATCCTCACCATCAAGATCACCTATACCTTTCAAACTCATCTCCAAATCTGCAATGTTTTCACCAAACTGGTACAAAGGTAGACATCAACAACCATTTCAATTCCAGGTTCCTACCCAATCAAAATCCAATTATACCTGAAAGAGTACTACCATCTAATCCTTCCTCTTGTGAAGATACATGGTCATTGGATTGTGTAGCTCTTGATCTCAACCCAAATCAATTGGAAAATCAAAGCCAAAGTGGCGCCACTCCATATAATATTGGTGACACATCAATCAACCAAAGTTCATTAATGCAGCAATATGATCAATATCATGATCATAACTTGGTTGAATATGAAGCCATTGTGCCTAAATTAGTCAATGATCAAAGCCTTGAGGATTATGCTAGTAGCATCCTAGATTATTCATCTGATTCCAAGGAACATGTGATCCTAAACTCCAATCATCATCATCAAGATCAGTTCTACCTTCCAAGTACCTCATCTCCAAATCTACAAGGAAATTTTTACCAAATTGATCCAAAGGTAGACATGATCAATAACCATTATAATCCAAATTTCCTTGACATTGAGAATCAAATACCATCTAATCCTTTCCCTGGTGAAGATACATGGTCATTAGATTGTGTGGCTCTTCATATCAATGGAAATAAAGAAAATCCAAGTTATACCACCCAGCAACACAATTTAGTCAACCCAATTGCATTAATGGCACACCAATATGATCAAAGCCTTGAGGACCATGATTGTTGCATCCTAGATTCATTTGATTCCAAGGAACATGAAGCTCTTAGTATTATTTATCCACAAGATCAAAATATGGAAGCTAACCAATTGGATAATTACATTGATGCCCTCATGTTATCATTGCCATCATCAAGCAGCCAATCAGTCAATTACAATACAAACCCTAGTAGTATTCCTTTAGGATGGGAGCCATAG 1419 0.3721 MMAHHSCCSKEKVNRGLWSPEEDEKLIKYITTYGQDCCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHEEVALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSGDIVPSFTTFYDIHLPYNAGFKESFFPLNANPNVMLNFNPHHQDHLYLSNSSPNLQCFHQTGTKVDINNHFNSRFLPNQNPIIPERVLPSNPSSCEDTWSLDCVALDLNPNQLENQSQSGATPYNIGDTSINQSSLMQQYDQYHDHNLVEYEAIVPKLVNDQSLEDYASSILDYSSDSKEHVILNSNHHHQDQFYLPSTSSPNLQGNFYQIDPKVDMINNHYNPNFLDIENQIPSNPFPGEDTWSLDCVALHINGNKENPSYTTQQHNLVNPIALMAHQYDQSLEDHDCCILDSFDSKEHEALSIIYPQDQNMEANQLDNYIDALMLSLPSSSSQSVNYNTNPSSIPLGWEP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04255 472 FunFam MYB transcription factor 7 68 - -
Mepo1g04255 472 CDD SANT 71 111 IPR001005 -
Mepo1g04255 472 Gene3D - 7 68 - -
Mepo1g04255 472 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Mepo1g04255 472 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mepo1g04255 472 SMART sant 14 65 IPR001005 -
Mepo1g04255 472 SMART sant 68 116 IPR001005 -
Mepo1g04255 472 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Mepo1g04255 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Mepo1g04255 472 CDD SANT 18 63 IPR001005 -
Mepo1g04255 472 MobiDBLite consensus disorder prediction 453 472 - -
Mepo1g04255 472 Gene3D - 71 118 - -
Mepo1g04255 472 PANTHER MYB DOMAIN PROTEIN 55 2 308 - -
Mepo1g04255 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mepo1g04255 472 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mepo1g04255 472 FunFam Myb transcription factor 71 118 - -
Mepo1g04255 472 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04255 Mepo-Chr1 49893297 49895123 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04255 2 201 MYB Transcription Factor Family AT3G13890 58.571 2.95e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g04255 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04255 K09422 - gmx:100785147 353.599