Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04244 ATGGGACATCACTCTTGTTGCAACAAACAGAAGGTTAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATATATTACAACATATGGACATGGTTGTTGGAGCTCTGTTCCAAAACATGCTGGTCTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGTAGCACTCATTATTGAACTACACAACATTCTAGGCAATAGATGGGCTCAGATCGCAAAATACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAACCATAAAGAAGAAAATCCATTCTCATGATATTATTCCATCTTTCACCATATTTTCTGATACTCACACCCCCTACCATAATATTGGTTCAATGGAAAACTTCTTCCCTTTAAATGCAAACCCTAATGTGATCCTCAACTTCAATCATTATCCCCATCAAGATTACCTATACCATTCAACCTCATCTCCAAATCAGCAAGAGCCAAAGGTAGACATCAATGACCATTTTAATGCCAATTTCCTTCACATTGAAAATCCAATACCACAAAATACAGTACAACCAATATTTAATCCTTCTCCATATGAAGATACATGGTCAATATTAGACAGTGTAGCTCTTCATCTCAATCCAGTTAATCAAGAAAATCAATTTTCGAAAAGTGATACGACCCCACTTAACAAATTAATGAACCCAATTGAATTAATGCAACAATATGATCAATATCATGATTTGGTTGAACTTGATGCTACTGTGCCTGAATTAGTCAATCATCAAAGCCTTGAGGATTATGTGGAAGCTCCAGCGAAAATTCAGTGCTACACTTCTGGTCTTATTCATCCACAAGATCAAAATGTGGAAGCTAATCCATTGGATTACAATATTGATGCTCTCATGTGTATGTCATCATTGCCACCCTCATGGAGCCAAATTGTCACAAATCCTATTATTCCTTTAGGATTGGAGTCTTAA 1020 0.3598 MGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEVALIIELHNILGNRWAQIAKYLPGRTDNEVKNFWNSTIKKKIHSHDIIPSFTIFSDTHTPYHNIGSMENFFPLNANPNVILNFNHYPHQDYLYHSTSSPNQQEPKVDINDHFNANFLHIENPIPQNTVQPIFNPSPYEDTWSILDSVALHLNPVNQENQFSKSDTTPLNKLMNPIELMQQYDQYHDLVELDATVPELVNHQSLEDYVEAPAKIQCYTSGLIHPQDQNVEANPLDYNIDALMCMSSLPPSWSQIVTNPIIPLGLES 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04244 339 FunFam Myb transcription factor 69 116 - -
Mepo1g04244 339 PANTHER MYB DOMAIN PROTEIN 55 1 219 - -
Mepo1g04244 339 CDD SANT 17 61 IPR001005 -
Mepo1g04244 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mepo1g04244 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mepo1g04244 339 Gene3D - 11 67 - -
Mepo1g04244 339 SMART sant 66 114 IPR001005 -
Mepo1g04244 339 SMART sant 13 63 IPR001005 -
Mepo1g04244 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo1g04244 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo1g04244 339 CDD SANT 69 109 IPR001005 -
Mepo1g04244 339 Gene3D - 68 124 - -
Mepo1g04244 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo1g04244 339 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Mepo1g04244 339 FunFam MYB transcription factor 6 66 - -
Mepo1g04244 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04244 Mepo-Chr1 49738818 49740584 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04244 1 118 MYB Transcription Factor Family AT3G13890 91.525 2.57e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g04244 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04244 K09422 - gmx:100785147 385.185