Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04226 ATGTCATCGTCGACTCATTCTCAAGGTTTTGGGAGGCCCACTTCAATCCAGCAAAGGGTGATTGCTCCTTTCTGTGAAGGTTTGGATGTGATTCTACAAGATCCGTCTGGAACTGGGATGTTAGAAACATTTTGTATTGGAATTCTGAAGAAGCTTGATTATGGATTGGTTCATTGCCAGGCTTTGGTTTTGGCCCCAACCGCGGAGCTGGTTTTACAGATTAAGGAGGTTATGCAAGATCTTGGTGAATTCCATGGTGTAAGGATTCATGCTTGCGTCAGGGGGACAAGTGCTCCTAAGGAGGATCGTCAGCGCATTCTCAAAGTTGGTTATAACAGTTACATTGTTGAAGGTGCTCCGAGTGTGTATGACATGGATGATCAATTCATTTTCAAAGGTGGTGTTCACATTATTGTTGGTACTCCGGGGAATGTGTATGACGTGCTGCAGAGGGGGCGTACTCGCCTAGATTACATAAAGATGTTTGTTATGGATGAGGTTGATGAAATGCTTTCACTTGGTTTCAAGGATAAGATCGATGAAATCTTCAAGCTACTACCGAGCGAAATTCAGGTTGGAGTAATCTCTGCTGCAATGCCACCTGAAGCCCTAGAGATTACTCGGAAGTTCATGAAAAAGCCTGTGACAGTTCAGGGGACCAAGCAGTTTTATGTCGATGTTGACAAGGAAGAGTGGAAGCTAGAGACACTATGCGACATCTTTGAGCTGACCGTTAAAGCTAAATCCATCACTCATTGTATCGTCTTTGTGAATACCATGGACAAAGTGGACTGGCTCATGGACGAGATGCGAAGCAGAGATCATAAAGTGTTTGTCATCCTCAAGTTTTTTTCCCAGGACATTAGGGATATCATTATGCGCGATTTTTTGTCCCAATCTGACTCTCCTCAAGTTCTCATTACCACTGATCCCCTGCTTTGTGGTACAGATGTGCATAAAGTTTCTCTGATCGTAAACTATGATCTCCCAACTGTGCCTGAAAACTATCTTCACCGTATAGGCCGGAGTGGGAAATTTGCTATAAACTTCATGACAAAGGATGAGGCTAGTATGCTCATAGATATTCAGAAATTCTACAATATGGTTATAGAGGAGCTGCCATGTAATTTTGATGATTTGCTCTGA 1146 0.4302 MSSSTHSQGFGRPTSIQQRVIAPFCEGLDVILQDPSGTGMLETFCIGILKKLDYGLVHCQALVLAPTAELVLQIKEVMQDLGEFHGVRIHACVRGTSAPKEDRQRILKVGYNSYIVEGAPSVYDMDDQFIFKGGVHIIVGTPGNVYDVLQRGRTRLDYIKMFVMDEVDEMLSLGFKDKIDEIFKLLPSEIQVGVISAAMPPEALEITRKFMKKPVTVQGTKQFYVDVDKEEWKLETLCDIFELTVKAKSITHCIVFVNTMDKVDWLMDEMRSRDHKVFVILKFFSQDIRDIIMRDFLSQSDSPQVLITTDPLLCGTDVHKVSLIVNYDLPTVPENYLHRIGRSGKFAINFMTKDEASMLIDIQKFYNMVIEELPCNFDDLL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04226 381 SMART ultradead3 9 228 IPR014001 -
Mepo1g04226 381 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 21 217 IPR014001 -
Mepo1g04226 381 Pfam Helicase conserved C-terminal domain 233 345 IPR001650 -
Mepo1g04226 381 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 381 IPR001650 -
Mepo1g04226 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 362 IPR027417 -
Mepo1g04226 381 Gene3D - 216 381 IPR027417 -
Mepo1g04226 381 PANTHER RNA HELICASE 8 365 - -
Mepo1g04226 381 CDD SF2_C_DEAD 221 350 - -
Mepo1g04226 381 Gene3D - 1 215 IPR027417 -
Mepo1g04226 381 SMART helicmild6 264 347 IPR001650 -
Mepo1g04226 381 Pfam DEAD/DEAH box helicase 14 202 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04226 Mepo-Chr1 49557365 49559945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04226 6 381 Eukaryotic Initiation Factors Gene Family AT1G72730 56.154 1.23e-149 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04226 K03257 - mof:131164951 427.943