Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04225 ATGCCCTCTTCAATCCAGCAAATGGTAATTGCTCCTTTCTGCGAAGGTTTGGATGTGATTCTACAGGATCCGTCTGGGATGTCGGTAACATTGTGTATTGAAATTATGAAGAAGCTTGATTATGAATTGGCTCATTGCCAGGCTGTGGTCTTAACCCCAACCTCGGAGCTGGCTTTACAGATTAAGGAGGTTATGCAAGATCTTGGTCAATTCCATGGTTTAAGGATTCATGCTTGCGTCGAGGAGACAAGTGTTGCTAAGGAGAATCGTCAGCGTTTTCTCAAAGTTCGTTATAACAGTTATATTGTTGAAGGTGCTTCGACTGTGTATGACATGGATGCTAAATTCATTTTCCAAGGTGGTGTTCACATTATTGTTGGGACTCCGGGGTGTGTGTATGACGTGCTGCAGAGGGGGCGTACTCGCCTAGATTGCATAAAGATGTTTGTTATGGATGAGGTTGATGAAATGCTTTCACTTGGTTTCAAGGATAAGATCGATGAAATCTTCAAGCTACTTCCCTTCGACATTCAGGTTGGAGTAATCTCTGCTGCAATGCCACCTGAAGCCCTAGAGATTACTCGGAAGTTCATGAAAAATCCTGTGACAATTCAGGGTACCAAGCATTTTTATGTCGATGTTGACAAGGAAGAGTGGAAGCTAGAGACACTATGCGACATCTTTGAGCTGACCGTTAAAGCTAAATCCATCACTCATTATATCGTCTTTGTGGATACCATGGAGAAAGTGGACTGGCTCACGGACAAGATGCGAAGCAGAGATCATTATGTCATTCACGGTGACAGGGACCAGAACACAATGGATACCATTGAGCATGAGTTTTTATTCCAGTCTGGCTCTCCTCAAGTTCTCATTACCACCGACGCCCTGGTTTGTGGTACAGATTTGAATAAAGCGTCTCTAGTCGTAAACTATGATCTCCCAACTGTGCCTGAAAACTATCTTCACTGTATAGGCCGGAATGGGAAATTTGCTATAAACTTCATGACAAAGGATGAGGCTAGTATGCTCATAGATATTCAGAAATTCTACAATATGGTTATAGAGGAGCTGCCATGTAATTTTGATGATTTGCTCTGA 1101 0.4269 MPSSIQQMVIAPFCEGLDVILQDPSGMSVTLCIEIMKKLDYELAHCQAVVLTPTSELALQIKEVMQDLGQFHGLRIHACVEETSVAKENRQRFLKVRYNSYIVEGASTVYDMDAKFIFQGGVHIIVGTPGCVYDVLQRGRTRLDCIKMFVMDEVDEMLSLGFKDKIDEIFKLLPFDIQVGVISAAMPPEALEITRKFMKNPVTIQGTKHFYVDVDKEEWKLETLCDIFELTVKAKSITHYIVFVDTMEKVDWLTDKMRSRDHYVIHGDRDQNTMDTIEHEFLFQSGSPQVLITTDALVCGTDLNKASLVVNYDLPTVPENYLHCIGRNGKFAINFMTKDEASMLIDIQKFYNMVIEELPCNFDDLL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04225 366 Pfam DEAD/DEAH box helicase 4 189 IPR011545 GO:0003676|GO:0005524
Mepo1g04225 366 SMART helicmild6 251 329 IPR001650 -
Mepo1g04225 366 PANTHER RNA HELICASE 2 350 - -
Mepo1g04225 366 Pfam Helicase conserved C-terminal domain 220 330 IPR001650 -
Mepo1g04225 366 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 366 IPR001650 -
Mepo1g04225 366 Gene3D - 1 202 IPR027417 -
Mepo1g04225 366 Gene3D - 203 366 IPR027417 -
Mepo1g04225 366 CDD SF2_C_DEAD 208 335 - -
Mepo1g04225 366 SMART ultradead3 2 215 IPR014001 -
Mepo1g04225 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 347 IPR027417 -
Mepo1g04225 366 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 10 204 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04225 Mepo-Chr1 49542457 49543692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04225 2 366 Eukaryotic Initiation Factors Gene Family AT1G72730 54.308 1.35e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04225 K03257 - csv:101221456 395.586