Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04223 ATGGTAATTCCTCCTTTCTGCGAAGGTTTGGATGTGATTTTACAGGATCCATCTGGAACTGGGATGTTAGAAACATTCTGTATTGGAATTCTGAAGATGCTTGATTATGAATTGGTTCATTGCCAGGCTTTGGTTTTGGCCCCAACCAACGAGCTAGCTTTACAAATTAAGGAGGTTATGCAAGATCTTGGTGAATTCCATGGTGTAAGGATTCATGATTGTGTCGGCGGGATAAGTGCTCCTATGGAGGATCTTCAGCGCTTTATGCAAGTTGGTTATAGTGTGTATGACATGGATGGTGAGGAATTTTTCCGAGAAGGTGTTCACATTATTGTTGGTACTCCGGGGTGTATGTATGACATGCTGCAGACGGGGCGTACTCGCCTAGGTTGCGTAAAGATGGTCGTTATGGATGAGGTTGATGAAATGCTTTCACGTGGTTTCGAGGAGAAGATCGATAAAATCTTCCAGCTATTGCCCTACAAAATTCAGGTTGGAGTAATCTCTTCTACAATGCCACCCGAAGCCCTTGAGATTACTAGGAAGTTCATGAAAAAGCCTGTGACAATTCAGGCAAAGCGTGATGAGCTGACCCTTGAGGGTATCAAGCAATTTTATGTCAATGTTGACGAGGAAAAGTGGAAGCTAGAGACATTGTATGACATCTATACTACTAAATTCATCACTCATTGTATCGTTTTTGTGAATACTGAGCGCAAAGTGAACTGGCTCATGGACAAAATGCGAAGCAGATATTATACAGTATCGGCCATCCATGATGACATGGACCAGAACACTAGGGATATCATCGTACGCGAGTTCCAGTCTGGTTCTCCTCAGATTCTCATTACTACCGACCCCTTGGTCTACGGTTTAGATGTGCAGGAAGTGTCTCTAGTCATAAACTATGATCTTCCAACTCTGCCTGAAAACTATCTCCACCGTATATGTCACAAAGGGAGATTTGGAAGAAAAGGCGTTGCTATAAATTTTGTGACATTAGATGATTTTAGAATGTTGTCTGATATCCAGAAACTCTCCAATGTGATTATAGAGGAGCTGCCATTAAATTTTGCTGATTTGCTCTGA 1089 0.4206 MVIPPFCEGLDVILQDPSGTGMLETFCIGILKMLDYELVHCQALVLAPTNELALQIKEVMQDLGEFHGVRIHDCVGGISAPMEDLQRFMQVGYSVYDMDGEEFFREGVHIIVGTPGCMYDMLQTGRTRLGCVKMVVMDEVDEMLSRGFEEKIDKIFQLLPYKIQVGVISSTMPPEALEITRKFMKKPVTIQAKRDELTLEGIKQFYVNVDEEKWKLETLYDIYTTKFITHCIVFVNTERKVNWLMDKMRSRYYTVSAIHDDMDQNTRDIIVREFQSGSPQILITTDPLVYGLDVQEVSLVINYDLPTLPENYLHRICHKGRFGRKGVAINFVTLDDFRMLSDIQKLSNVIIEELPLNFADLL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04223 362 FunFam Eukaryotic initiation factor 4A-III 196 362 - -
Mepo1g04223 362 Pfam DEAD/DEAH box helicase 2 175 IPR011545 GO:0003676|GO:0005524
Mepo1g04223 362 CDD SF2_C_DEAD 202 332 - -
Mepo1g04223 362 PANTHER RNA HELICASE 2 339 - -
Mepo1g04223 362 Pfam Helicase conserved C-terminal domain 215 323 IPR001650 -
Mepo1g04223 362 SMART helicmild6 242 323 IPR001650 -
Mepo1g04223 362 Gene3D - 1 197 IPR027417 -
Mepo1g04223 362 Gene3D - 198 362 IPR027417 -
Mepo1g04223 362 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 3 190 IPR014001 -
Mepo1g04223 362 SMART ultradead3 1 205 IPR014001 -
Mepo1g04223 362 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 201 362 IPR001650 -
Mepo1g04223 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 343 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04223 Mepo-Chr1 49528006 49529379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04223 3 362 Eukaryotic Initiation Factors Gene Family AT1G72730 64.444 3.03e-164 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04223 K03257 - sly:101252510 455.677