LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g04221	ATGGGAAATCAAAAGCTGAAATGGACGAATGAAGAAGAAGACGCTCTTATCGCTGGAATCGAAAGACATGGCCCTGGTAAATGGAAAGCCATTCTCCTTGATCCTCACTTTGGTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGAGGAATATGAATGTGAATAATATTACTCAAGTTCCTAAGTTTCCCAAATGCAAACCTGCTTCTTCTCCTGTTCCTGCTGCTGCTCTTGTTTCTTCTTCCAGTGTTGCTGTTAATCAAACTGTTGCTCTTCCTTCTTCTGATGTTGTTAACAATGTTCCTCCTCCTCTTCAAATTGACCAAGATGTTGTTAAAAACCACACTCCTAGGTATGATGTCATGATTTATGAAGCTCTGTCTACATTAAAGGATACTAATGGATCCGACGTAAATGCCATTGCTAGTTTCATTGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAAGTCACTGAATGCAAGGTTGAGGATGCTTGTGAATCAAGGGAAGCTTGAAAAGGAACAAAATTGTTTCAAGATAAAAGAAGCCTTGTCAGTGAAAAAATCACCTTCACCAAAACAAAAGGAGGCCAAGCCATCACCTTCACCAAAACAAAAGGTGGTCAGGCCGAAACGGCAATCATCAGACTCTGATGATATGCTGAAGGAAGCAGCTGAAACTGCAGCATACATAATTGCTGAAACTGAAAACAAATCATATCTGGCAACTGAGGCAGTCAAGGAGACGGAAAAATTCTCACGCATGGCTGAAGGAAATGATGCAATGTTGTTGTTAGCAGAACAACTTTATGAACAATGTTTGCGCGGTGAAACTATCAAATGGGCTTAA	864	0.4051	MGNQKLKWTNEEEDALIAGIERHGPGKWKAILLDPHFGPLLTSRSNIDLKDKWRNMNVNNITQVPKFPKCKPASSPVPAAALVSSSSVAVNQTVALPSSDVVNNVPPPLQIDQDVVKNHTPRYDVMIYEALSTLKDTNGSDVNAIASFIEQKHQVPQNFRKSLNARLRMLVNQGKLEKEQNCFKIKEALSVKKSPSPKQKEAKPSPSPKQKVVRPKRQSSDSDDMLKEAAETAAYIIAETENKSYLATEAVKETEKFSRMAEGNDAMLLLAEQLYEQCLRGETIKWA	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g04221	287	Pfam	linker histone H1 and H5 family	121	179	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mepo1g04221	287	SUPERFAMILY	Homeodomain-like	3	63	IPR009057	-
	Mepo1g04221	287	MobiDBLite	consensus disorder prediction	188	225	-	-
	Mepo1g04221	287	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Mepo1g04221	287	PANTHER	SINGLE MYB HISTONE 4	1	284	IPR044597	GO:0003691
	Mepo1g04221	287	Pfam	Myb-like DNA-binding domain	6	56	IPR001005	-
	Mepo1g04221	287	SMART	h15plus2	117	181	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mepo1g04221	287	MobiDBLite	consensus disorder prediction	188	207	-	-
	Mepo1g04221	287	CDD	SANT_TRF	7	57	-	-
	Mepo1g04221	287	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-
	Mepo1g04221	287	FunFam	Telomere repeat-binding factor 1	2	58	-	-
	Mepo1g04221	287	CDD	H15	121	198	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mepo1g04221	287	Gene3D	-	2	59	-	-
	Mepo1g04221	287	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	119	187	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mepo1g04221	287	Gene3D	-	116	206	IPR036388	-
	Mepo1g04221	287	SMART	sant	4	59	IPR001005	-
	Mepo1g04221	287	SUPERFAMILY	"Winged helix" DNA-binding domain	119	198	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g04221	Mepo-Chr1	49513769	49517811	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g04221	1	287	Single Myb Histone (SMH) Gene Family	AT1G72740	45.205	4.81e-68	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Mepo1g04221		Linker_histone	1.1e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g04221	K09422		-	gmx:778177	267.7