Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04187 ATGGACGCGCGCACACAGTATAATCCACGCACCGTTGAGGAAGTTTTCAGAGATTTTAAGGGTCGTCGTGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGAGTTCTATACCCAATGTGATCCGGAGAAGGAGAATCTGTGCTTGTATGGCTTCCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCTGAGGAAGTTCCACCAGAGCTTCCCGAGCCTGTGCTTGGCATTAACTTTGCCAGGGATGGCATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCACAGTGATTCATGGTTAATCGCCATTGCGTACTACTTTGGTGCCAGATTTGGCTTCGACAAATCTGACAGGAAGCGCCTGTTCAACATGATCAATGATCTGCCATCAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTCAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCCAAGTCCAGCTCGAAAGCGCAGCGGGCTCCAGAACCTCAGGTTAAGCAGACAAAGCCATTGGAGTTACCTAAAGATGATGAGGTGGAAGAACTGGACGAGGAAGATGAAGATGAACATGGAGAGACCTTATGTGGTGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCTAGGGCTGAGCATATCAAGCATTACAAGTGTCCATCATGCAGTAACAATAAGAGAGCTCGCCCTTGA 774 0.4703 MDARTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMINDLPSIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPEPQVKQTKPLELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNNKRARP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04187 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Mepo1g04187 257 MobiDBLite consensus disorder prediction 150 170 - -
Mepo1g04187 257 Pfam PHD-finger 203 251 IPR019787 -
Mepo1g04187 257 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Mepo1g04187 257 SMART PHD_3 202 250 IPR001965 -
Mepo1g04187 257 FunFam PHD finger alfin-like protein 195 251 - -
Mepo1g04187 257 MobiDBLite consensus disorder prediction 145 196 - -
Mepo1g04187 257 CDD PHD_AL_plant 202 252 IPR044104 -
Mepo1g04187 257 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Mepo1g04187 257 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Mepo1g04187 257 PANTHER CPG BINDING PROTEIN 8 256 IPR045104 GO:0006355|GO:0042393
Mepo1g04187 257 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04187 Mepo-Chr1 48796605 48800905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04187 7 256 Alfin-like Transcription Factor Family AT3G42790 73.200 1.57e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo1g04187 Alfin 4.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04187 K26274 - gmx:100170700 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04187 1 48796605 48800905 Mepo6g04067 6 52906989 52911606 ECH
Mepo1g04187 1 48796605 48800905 Mepo1g04187 1 48796605 48800905 ECH
Mepo6g04067 6 52906989 52911606 Mepo1g04187 1 48796605 48800905 PCT