Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04186 ATGAAGCACTCATGGCCATGGGGGACTTGTTCTGAATCTGATGTGCAACTATCCTCTATGTCCGAAAATCTGACTTTGAAAATGAGTGTTTTGCAACAAGAATGCCACAAGACTAAGCCACTAGTTTTTCAATTTCAAGACCAAGATTCTTCTTCTACTCAATCAACTGGTCGTCAATCTTATCTGGAAGTTGGTTCGGAACAATCCGGTTCAATTTCTTTCCAGTATAACAATTCCTCTGCTTGTTCAACACTTAGCGAAGCCGGCGGAAAGAGTGTGGAAGGTATCATCAGGTCATCTGCAGGGAGTCAAGATTTTACTTTGCCTCCTTCTCAACTGGATCACAACCAATCACTTGCTCATGTTGCATTCCCTCATGCTGAGACATGCTCTAATGGCCTACTAGCAGCTCCATATGGATCACGGAATAATGTTCATCATGCTCAGCTAGTAGGAATGCCTCCTGTTCGGATTCCTTTGCCTCTTAATCTTTGTGAGGAACCAATTTATGTAAATGCAAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTTGTCAAAAATCGGAAACCATATCTACACGAGTCGCGCCATCTGCATGCATTGAAGAGAGCTAGAGGCTCTGGCGGACGTTTTCTAAATACGAAAAAGCTCCAAGACCATGGCTTTAATTTTTCCACCACCACTCGGTTGAATCCGAGTGGAAATGTGCTGGAATCAAGAGTACATCAAGTAGAAAAGTATAAAGATGGTGCTTCCACAACCACTTGTTCTGACATCACAAGTGCTTTTAATAGTGACGACATGTTCCAACAACATGAATCCGACTTCAGATCATGCGGTTATCCTTCTCATATGCAGGATTTATCAGCCGATGCCGGTGGTGGTGGTGGTCGGAATCAACACCGCCTATATGTCCTTATGCGAGAGACATGA 966 0.4348 MKHSWPWGTCSESDVQLSSMSENLTLKMSVLQQECHKTKPLVFQFQDQDSSSTQSTGRQSYLEVGSEQSGSISFQYNNSSACSTLSEAGGKSVEGIIRSSAGSQDFTLPPSQLDHNQSLAHVAFPHAETCSNGLLAAPYGSRNNVHHAQLVGMPPVRIPLPLNLCEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTKKLQDHGFNFSTTTRLNPSGNVLESRVHQVEKYKDGASTTTCSDITSAFNSDDMFQQHESDFRSCGYPSHMQDLSADAGGGGGRNQHRLYVLMRET 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04186 321 Gene3D - 165 226 - -
Mepo1g04186 321 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Mepo1g04186 321 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 285 IPR001289 GO:0003700|GO:0006355
Mepo1g04186 321 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Mepo1g04186 321 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
Mepo1g04186 321 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
Mepo1g04186 321 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 222 IPR001289 GO:0003700|GO:0006355
Mepo1g04186 321 ProSitePatterns NF-YA/HAP2 subunit signature. 170 190 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04186 Mepo-Chr1 48779961 48782541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04186 4 294 CCAAT-HAP2 Transcription Factor Family AT3G14020 44.667 3.79e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo1g04186 CBFB_NFYA 4.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04186 K08064 - gmx:100500765 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04186 1 48779961 48782541 Mepo1g04186 1 48779961 48782541 ECH
Mepo6g04066 6 52902470 52906175 Mepo1g04186 1 48779961 48782541 PCT