Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04178 ATGGCTTTTTCAGCATATGAAGAAATGTATATTCTCCCTGGGATCATAATCACTGGAGCACTAGTAATTGCTTTTACATTTTTCATTCTCACAATGTTAGGATGGTGCAGGCTTACCAATCATGATTCAAATCTTCCTACAACTGTCATATCTTCTAATGACAAATTTTCTGCTTGCATGAGTTTAGAGTCACATTCAATCACATTTCTGTACAATGAAGCTGATGCTGCACAAGACGTAAACCAAACTGAATGTGTTATCTGTTTAACAGTTTTTCAAGAAGACGAAAGTGTTCGGAAGCTTCACACTTGCAAGCATGTGTTTCATACATCTTGCATTGATAAGTGGCTTGCCTCTCATTTGGGATGTCCGTTGTGTCGCTCTCAGATTGATCAAGTAACTTCACCAAATGGATCATTGACAAATAATGATCATAGGACTGTAGAAATTGTTGACTCTAGGATTGAGAATATTCTGGTTCATAGCAACCTACTAGTGACAATGACATAG 510 0.3725 MAFSAYEEMYILPGIIITGALVIAFTFFILTMLGWCRLTNHDSNLPTTVISSNDKFSACMSLESHSITFLYNEADAAQDVNQTECVICLTVFQEDESVRKLHTCKHVFHTSCIDKWLASHLGCPLCRSQIDQVTSPNGSLTNNDHRTVEIVDSRIENILVHSNLLVTMT 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04178 169 Pfam Ring finger domain 84 127 IPR001841 -
Mepo1g04178 169 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 132 IPR044675 -
Mepo1g04178 169 SMART ring_2 85 126 IPR001841 -
Mepo1g04178 169 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Mepo1g04178 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Mepo1g04178 169 SUPERFAMILY RING/U-box 69 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04178 Mepo-Chr1 48633966 48634475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04178 80 146 C3H Transcription Factor Family AT5G10380 47.761 3.73e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04178 - - mtr:25500542 335.495