Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04154 ATGGTTAGAAGTCCTAAGGAGGTTAATAAAGGTGCTTGGTCTCGTGAAGAAGATGATATCCTCTCCAAATATGTTGTCATTCATGGAGAAGGAAAATGGCAGAAGGTTGCTCAAAATGCAGGTTTGAAGCGGTGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAACCAGGTATAAAGAGAGGCGACATCTCTACCGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGTCATTGATAGCTAAGAGGCTGCCAGGACGAACAGATAATGAAATCAAGAACTACTGGAACACTAATCTGTCAAAGAAGTTACAGAAACAGCCCACGTTGCCATCATCGTCTTCTGTTTCACTTCAACATAATCATCACAAATGCGGACATGTAGCACCAGAAGCTCCAAAGCCTAGGAGACTGAAGGTTGTTCATCAATACAACAAAATTTTGGAGAAGAATAATGGAAATGAGTGTGATCAAGGCAGCGATGAAACTTCTATTGCTGATTTTCTAATTGACTTTGATCATCAAGATCAATTGATGGTTGGTGATGATGAGTCTAATTCAAAGATTCCACAAATGGAAGATCACAAGCAGAGAAATTTGATCCTTCAGAGGCCCTTCTGGATGTGGAGCTTAAGAAGATGGCTTCCTTTCTTGGACTTGAAAATGATTGAAGTGATTTATTGCAATGAGGGGACCAAGAGAAGAAAAAGTTCAATGAGTTGTGAATCATATAGTCTTTGCTATATGCCATTTTATATGTATTTCCTAACTAAACATCTAACTAGATGA 813 0.3862 MVRSPKEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTLPSSSSVSLQHNHHKCGHVAPEAPKPRRLKVVHQYNKILEKNNGNECDQGSDETSIADFLIDFDHQDQLMVGDDESNSKIPQMEDHKQRNLILQRPFWMWSLRRWLPFLDLKMIEVIYCNEGTKRRKSSMSCESYSLCYMPFYMYFLTKHLTR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04154 270 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Mepo1g04154 270 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mepo1g04154 270 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Mepo1g04154 270 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Mepo1g04154 270 CDD SANT 12 57 IPR001005 -
Mepo1g04154 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Mepo1g04154 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Mepo1g04154 270 FunFam MYB-related transcription factor 9 62 - -
Mepo1g04154 270 FunFam Transcription factor TT2 66 135 - -
Mepo1g04154 270 SMART sant 9 59 IPR001005 -
Mepo1g04154 270 SMART sant 62 110 IPR001005 -
Mepo1g04154 270 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Mepo1g04154 270 CDD SANT 67 108 IPR001005 -
Mepo1g04154 270 Gene3D - 3 63 - -
Mepo1g04154 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
Mepo1g04154 270 Gene3D - 67 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04154 Mepo-Chr1 48273116 48274915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04154 1 112 MYB Transcription Factor Family AT5G40330 64.912 5.41e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g04154 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04154 K09422 - gmx:547568 283.878