LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g04122	ATGTTGTCGTGTCCGGCGGCCTTGAATCAGAAAACTACCTCTCACAAGAAGTACGATGTGTTTATTAGCTTTAGAGGCGAGGATACTCGCCACGGTATCACAAGCCATCTTTACGATGCTCTGATTCATAAATCAATAAATACATACATAGATTACCAGCTCAATAGAGGAGAAGATGTTTGGCCAGCACTTGAAAAAGCAATTGAAGCCTCATACGTCTCCATCGTTGTTTTCTCTGAAAATTATGCTACATCAAAATGGTGTTTGGAAGAACTGGTCAAAGTGCTGCAATGCAGAAAACTTCACGGTCAAGTTGTAATACCTGTTTTCTATAAAACAAATCCGTCTCACATAAGAAAGCAGACTGGCAGTTATGGGAATGCATTCGCAAAACATGAGCGTGATCTCGGGACCAAAGATAGCGAATCCAACAAATTGAAAGTACAAAACTGGAAAGATGCCCTTACTGAAGCAGCCAATATATCTGGATGGGACACTGAAACCCACAAGGACGAATCTATCCTCATCCTCAAAATTGTGAATGATGTATTGCAAAAGCTACAATTGATGCACCCCAATGAACTAGAAGGCGTTGTGAGAAACGAAAAAAACTGTGAATCCGTAGAATCATTACCGAAAAGTTTCCGAATAATCGGAATTTGGGGTATGGGCGGAATTGGAAAGACAACCATTGCCAAAGTCTTGTTTGCCAAACACTTTGCCCAATATGACCATGTTTGCTTTGCTAATGCAAAACAATACTCAGTTAGTAAGCTTTTGTCTGAGCTACTAAAGGAAGAAATTTCCCCATCTGATGTTGTAATATCTAAATATCATATGAGGAGGCTGAGAAGTAGAAAAGTTTTGATTGTAATTGATAATGTGGAAAGTTCAGATCAATTTGAATATTTGTGCAGAGACTACCATGACCTAACTCAGGATAGTAGACTCATTATAACAACACGCGACAGACAATTGTTGAATGAAAGAGTTGATTGGATATATAAGGTCAAACAATGGGAGGATCCAAAATCTCTAGACCTTTTTTGCCTTGAAGCTTTCGTGCCAAGTCATCCCCGAGCGAAGTATGAGCATCTCTTGCAAAGGGCAATCACTTATGCAGGGGGCGTTCCACTTGCCCTTAAACTTTTGGCTTCACATCTTCGTACAAGAGATATTGCATTTTGGGAAAGTTCTTTCAAGAAACTCGACGATCATCCTGATGACCAATTGAACAAAGTTTTAAAAGTGAGCTATTATGAATTAGATGCACTGCAGAAGAAGATATTTCTTGACATTGCATTCTTCTTCATAGGAGAAAAGAAAGAGTGTGTCACAAAGATACTAGATGCTTGCGGTTTTGAACCAAATAGTGGAATAGTAGTCCTCAAAGACAAGGCTCTGATAACTATCTCAAATAACCATACAATACAGATGCACGACTTGCTACAAAAAATGGGATCGGACATAATACGTAATGATTGTGGCGAGGACCTGGCAGCACATACCCGGTTGAGTGGGAGTAAAGCTCGTGAAGTTATTGAAGAAAACAAGGGGAGTAGCTCAATTGAAGGCATAACATTGGATTTGTTTCAAAATAATGAGATACCTTTAAGTGCTGACACATTCACTAAGATGAAAGGCTTAAGAATTCTTAAATTCCATGCACCCTCTAACCTGCAGAGATGTACTAACACATACCTCAGCCTTCCCAAATTTCTGGAGCCATTTTCAAATAAACTGAGCTATAACTATAACAGTGTTGATGCTTGTGGACCAGGAACGAGTATCCCAAGGCTGTTAGATTGTGAAACAGTTGCTGACTCCTCTATTACCATTCAATTGATTCCTTACAGTTACAACTTGCTGGGATTCATATACGCAGTGGTTGTTTCTCCAGCAGGTGGAAATGGAACGAAGAGTGGAGTAGCTAGAATAAAATGTCAATGCAAATTGGGAGAAGATATAAAGGCTAGCTGGCTAAATACCGATGTCTCAGAACTGAACTCGGATCATGTTTATGTGTGGTATGATCCATTCCATTGTGACAGCATTCTCAAATTTTATCAATCTAAGATTTGTTTTGAGTTCTATGCTACAAACGCGACTGGGGAAGTTAATGGTTCAATTAGTATTAAAGAGTGTGGGGTACGACAAGTAAGTGTTGAAGAATTGGAGAGCATTTTGCCGGAATTGGAATTGGATACACAAAAGGAAGAAGAGTTGAAGAAGGCAGTGGAATTAGAATCAGAACATATTATAATCTTGGAGCCAATTCAAAAGCATTCCCTAAGTATTTCACTAGACTCTGGTGATACTCAGGTACATGAAAATCTTCAAGAGAAAGAAAATTTGGATGATGATCATGAATCCAAAGAAATCATGAAATCTAAGATTCTTCGTAAGAGTATTTCCTTAAAGAAGGTGGATTCTACTGGAGACGGTTATGATGTAGAAGGGTTTATCAATAAAGAAACTAAGTGTCTTAGTAATGTTGCTAAGCAAGGGAAAATGAAAGCTCGACAAAATATCCAATATATTGAGCCTACTAAAGAATCTACTGAGTTCAATAGCACTGGAAACGAAGGAAGATCAACGGAATCTGAAGCTGCATTGCATCTACCTCTAGTGTTAACTGTAAAAGGAAATGATTCTGATAACAAGTCAAGTGAAAACAACTACGGTTGGCAAGACAATTTCAATGAGACCAAGAATCAAGAAGAAAAACCAAATATACAAGGAGGACAAATCACTGTTCCTGACATCAATGATTTGATAAGTGAACCAGAGCAGGAAAAAGAAAATGCACCATATCATAAGATGATACAGAACCTTGAGAAATGA	2844	0.3847	MLSCPAALNQKTTSHKKYDVFISFRGEDTRHGITSHLYDALIHKSINTYIDYQLNRGEDVWPALEKAIEASYVSIVVFSENYATSKWCLEELVKVLQCRKLHGQVVIPVFYKTNPSHIRKQTGSYGNAFAKHERDLGTKDSESNKLKVQNWKDALTEAANISGWDTETHKDESILILKIVNDVLQKLQLMHPNELEGVVRNEKNCESVESLPKSFRIIGIWGMGGIGKTTIAKVLFAKHFAQYDHVCFANAKQYSVSKLLSELLKEEISPSDVVISKYHMRRLRSRKVLIVIDNVESSDQFEYLCRDYHDLTQDSRLIITTRDRQLLNERVDWIYKVKQWEDPKSLDLFCLEAFVPSHPRAKYEHLLQRAITYAGGVPLALKLLASHLRTRDIAFWESSFKKLDDHPDDQLNKVLKVSYYELDALQKKIFLDIAFFFIGEKKECVTKILDACGFEPNSGIVVLKDKALITISNNHTIQMHDLLQKMGSDIIRNDCGEDLAAHTRLSGSKAREVIEENKGSSSIEGITLDLFQNNEIPLSADTFTKMKGLRILKFHAPSNLQRCTNTYLSLPKFLEPFSNKLSYNYNSVDACGPGTSIPRLLDCETVADSSITIQLIPYSYNLLGFIYAVVVSPAGGNGTKSGVARIKCQCKLGEDIKASWLNTDVSELNSDHVYVWYDPFHCDSILKFYQSKICFEFYATNATGEVNGSISIKECGVRQVSVEELESILPELELDTQKEEELKKAVELESEHIIILEPIQKHSLSISLDSGDTQVHENLQEKENLDDDHESKEIMKSKILRKSISLKKVDSTGDGYDVEGFINKETKCLSNVAKQGKMKARQNIQYIEPTKESTEFNSTGNEGRSTESEAALHLPLVLTVKGNDSDNKSSENNYGWQDNFNETKNQEEKPNIQGGQITVPDINDLISEPEQEKENAPYHKMIQNLEK	947

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g04122	947	Pfam	NB-ARC domain	216	422	IPR002182	GO:0043531
	Mepo1g04122	947	ProSiteProfiles	TIR domain profile.	16	187	IPR000157	GO:0007165
	Mepo1g04122	947	PRINTS	Disease resistance protein signature	282	296	-	-
	Mepo1g04122	947	PRINTS	Disease resistance protein signature	217	232	-	-
	Mepo1g04122	947	PRINTS	Disease resistance protein signature	374	388	-	-
	Mepo1g04122	947	Pfam	TIR domain	17	193	IPR000157	GO:0007165
	Mepo1g04122	947	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	433	IPR027417	-
	Mepo1g04122	947	Gene3D	-	184	334	IPR027417	-
	Mepo1g04122	947	SMART	till_3	17	161	IPR000157	GO:0007165
	Mepo1g04122	947	SUPERFAMILY	Toll/Interleukin receptor TIR domain	12	164	IPR035897	-
	Mepo1g04122	947	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	189	-	-
	Mepo1g04122	947	Gene3D	-	14	183	IPR035897	-
	Mepo1g04122	947	MobiDBLite	consensus disorder prediction	881	947	-	-
	Mepo1g04122	947	Gene3D	-	341	423	IPR042197	-
	Mepo1g04122	947	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	599	IPR044974	GO:0006952
	Mepo1g04122	947	SUPERFAMILY	"Winged helix" DNA-binding domain	410	495	IPR036390	-
	Mepo1g04122	947	MobiDBLite	consensus disorder prediction	926	941	-	-
	Mepo1g04122	947	MobiDBLite	consensus disorder prediction	882	920	-	-
	Mepo1g04122	947	Coils	Coil	722	742	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g04122	Mepo-Chr1	47934361	47940943	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g04122	11	581	WRKY Transcription Factor Family	AT4G12020	28.451	2.73e-46	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g04122	-		-	mtr:11418910	884.404