Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04097 ATGCAGAATCATAGGCTGAAGCAACAGCAACATCAGCATCAACAACAGCAACAACAACAAGCTATGATGCAACAAGCTGCTCTTCTTCAACAACAGTCTCTCTATCACCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAACGTCCATACACAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGGTGTAAACTTTTTAGGAAAGAGAAGTCATCCTATGGATTCATTCATTACTTCGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGGCATCTATTCGGGCAACCTATCAAAGTTAACTGGGCATATGCCAGTGGTCAAAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACCGATGCTACACTTTTCGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGCCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGCGGTATTGAAGAGAAGCAAAACTCAGACAGTAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGACGGTAAAGAGATATCTAGCAATGATGTTCCTGAGAACAATCCTCAATATACAACTGTTTATGTGGGTAACCTTGGATCAGAGGCGACACAGCTTGATCTCCATCGTCATTTCCATGCTCTTGGGGCTGGTGTGATAGAGGAAGTTCGCGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGATATAGTACTCATGCTGAAGCAGCTCTGGCAATTCAGATGGGAAATGCCCAGTCTTATCTCTGTGGCAAATTAATTAAGTGTTCTTGGGGAAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCTCCACCTGCTGCTGCGCCTCTGCCAGGCCTATCTGCAACAGATATTTTGGCATACGAGCGGCAGCTAGCAATGAGCAAGATGGGTGGAGTTCATGCTGCGTTGATGCATCCCCAAGCACAACATCCTCTTAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATATACGACGGCGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTACTACCAGTAA 1287 0.4631 MQNHRLKQQQHQHQQQQQQQAMMQQAALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKLIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04097 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 226 IPR000504 GO:0003723
Mepo1g04097 428 CDD RRM1_PUB1 65 135 - -
Mepo1g04097 428 MobiDBLite consensus disorder prediction 232 264 - -
Mepo1g04097 428 Gene3D - 246 348 IPR012677 -
Mepo1g04097 428 MobiDBLite consensus disorder prediction 230 264 - -
Mepo1g04097 428 FunFam oligouridylate-binding protein 1B-like isoform X2 1 145 - -
Mepo1g04097 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 220 IPR000504 GO:0003723
Mepo1g04097 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 131 IPR000504 GO:0003723
Mepo1g04097 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 328 IPR000504 GO:0003723
Mepo1g04097 428 Gene3D - 1 146 IPR012677 -
Mepo1g04097 428 FunFam oligouridylate-binding protein 1-like isoform X2 146 241 - -
Mepo1g04097 428 Gene3D - 147 228 IPR012677 -
Mepo1g04097 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 347 - -
Mepo1g04097 428 CDD RRM2_PUB1 147 226 - -
Mepo1g04097 428 FunFam Oligouridylate-binding protein 1C 246 348 - -
Mepo1g04097 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 137 IPR000504 GO:0003723
Mepo1g04097 428 MobiDBLite consensus disorder prediction 1 23 - -
Mepo1g04097 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 344 IPR000504 GO:0003723
Mepo1g04097 428 SMART rrm1_1 149 222 IPR000504 GO:0003723
Mepo1g04097 428 SMART rrm1_1 64 133 IPR000504 GO:0003723
Mepo1g04097 428 SMART rrm1_1 270 340 IPR000504 GO:0003723
Mepo1g04097 428 SUPERFAMILY RNA-binding domain, RBD 258 351 IPR035979 GO:0003676
Mepo1g04097 428 SUPERFAMILY RNA-binding domain, RBD 47 141 IPR035979 GO:0003676
Mepo1g04097 428 SUPERFAMILY RNA-binding domain, RBD 142 233 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04097 Mepo-Chr1 47612722 47618442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04097 64 338 Eukaryotic Initiation Factors Gene Family AT3G16380 26.027 8.99e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04097 K13201 - gmx:100781227 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04097 1 47612722 47618442 Mepo1g04097 1 47612722 47618442 ECH