Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04061 ATGTGTGGTGGAGCTATTATCTCCGACTTCATTCCAGCTGCGGCGGCGGTTGGTGGCTCCCGCCGCGTCACGGCGGATATCCTCTGGCCGAACTTGAGGAAGAAGCCAAGTTCAAGGAAACCTTTTTTGCTTGACGATGATTTCGAGGCTGGGTTCAGAGAGTTTAAGGATGATTCTGATTTCGATGAAGACGAGGATGAAGATGATGATGAAGGGTTGTTGGTCGGTGTCAAAGGTTTCACCTTTGCTTCCAATAAGAACAACAAATCTTCTAAGTCCTTTGTTCGTGGATCAAGTGCTGCAAAATCTGTTGCTTTGAATACAAACGAGCAAGCTGAAAAGGATTCAAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTCTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCTCCAGTTGCTTCCTCAAAACGTCTCAAGAAAAATCCTGAGACGCAGCTGTTGAATGAAAATCTGAACTCTTTAAAGCCGAATGTAAACCAAATGTTCAATTTCAGCGAAAATATGGAGAACTACTATCCTCCTATGGATCAGGTGGAACAGAAACCATTGGTTAACAGCCAATATGCTGACATCGGAGCCTTCTCTGGAAACGAAGTGCAGCTTACATCTGCTGATGTTAATGCTTATTTCAGTTCAGAGCATTCAAGCAATTCGTTTGATTATTCTGATCTATGTTGGGGAGAACAAGGCCCAAAAACACCTGAGATTTCGTCTGTGTTTTCTGCTGCTGCTCCTATGGAAGGCGAATCTCAGAAGAATATGCTGTCTGACGACACTCAGGATATGCTGCCTATGCAAAATGATTCTGCAAAGACCCTCTCTGAGGAGCTCGCAGATATCGAATCTCAGCTGAAGTTCTTCGAGAACGATACCTGGAGTGATGCTTCATTGGCAGCTTTGCTTGGTGGAGAGACAACTCAGGATGGTGGAAACACAATGAACCTTTGGAACTTCGATGACCTGCCTTCCATCGCAGGCGGTGTTTTCTAA 1149 0.4578 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKKPSSRKPFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGVKGFTFASNKNNKSSKSFVRGSSAAKSVALNTNEQAEKDSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPVASSKRLKKNPETQLLNENLNSLKPNVNQMFNFSENMENYYPPMDQVEQKPLVNSQYADIGAFSGNEVQLTSADVNAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAAAPMEGESQKNMLSDDTQDMLPMQNDSAKTLSEELADIESQLKFFENDTWSDASLAALLGGETTQDGGNTMNLWNFDDLPSIAGGVF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04061 382 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Mepo1g04061 382 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Mepo1g04061 382 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Mepo1g04061 382 Gene3D AP2/ERF domain 122 182 IPR036955 GO:0003700|GO:0006355
Mepo1g04061 382 PANTHER DNA-BINDING DOMAIN 89 267 IPR044808 GO:0003700|GO:0009873
Mepo1g04061 382 MobiDBLite consensus disorder prediction 107 127 - -
Mepo1g04061 382 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Mepo1g04061 382 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Mepo1g04061 382 Coils Coil 323 343 - -
Mepo1g04061 382 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Mepo1g04061 382 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Mepo1g04061 382 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04061 Mepo-Chr1 47239032 47241982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04061 1 382 AP2-EREBP Transcription Factor Family AT3G14230 43.032 9.58e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo1g04061 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04061 K09286 - gmx:100818646 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04061 1 47239032 47241982 Mepo1g04061 1 47239032 47241982 ECH