Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04059 ATGGCTTCTTCATACAGAAACAACACATCAACAAAAAGCAACAACAAACGTAAGAGAACCATTAAAATCAAGAAAGCAGAACAATCAAACAAGCCTCGTGATTCCTTCTCAAAACGCAAACTAGGACTCTTCAACAAAGTTACAGAACTATCTATTTTATGCAATGCAAAAACTGCATTGATCATCACTTCACCAAACGAAAAACTCTATGTTTGTGGTTACCCTAACCCCAACACCGTCATTAAACACTTTCTCGATAAGGAAAACCTAGTCATCGACGCTGAAAAAAGGAAGCAAGATGAGGGCATAGTTGAAACCTTAAGGCTTCAACATGAGGTAATAGAAGAACGGCTGAAAGAAGAGAGTGATTATTTAGAAGGTGTAAAAGAGACGAACAAGAGCAGTTCATGTTTTTCTTGCTGGTGGGGTCATTCTATTGATGATATGGCTTTGGAATCTCTTGAGGAATTTAAGACTGCTTTGGTAAAATTGAAGCTTAATTTAGATGCATCCTTGGAAGGAAAAAAGATTCATATAACTACTCAGTCTTGA 552 0.3696 MASSYRNNTSTKSNNKRKRTIKIKKAEQSNKPRDSFSKRKLGLFNKVTELSILCNAKTALIITSPNEKLYVCGYPNPNTVIKHFLDKENLVIDAEKRKQDEGIVETLRLQHEVIEERLKEESDYLEGVKETNKSSSCFSCWWGHSIDDMALESLEEFKTALVKLKLNLDASLEGKKIHITTQS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04059 183 CDD MADS 35 75 - -
Mepo1g04059 183 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mepo1g04059 183 PANTHER MADS BOX PROTEIN 20 168 - -
Mepo1g04059 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 71 IPR002100 GO:0003677|GO:0046983
Mepo1g04059 183 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mepo1g04059 183 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mepo1g04059 183 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mepo1g04059 183 Gene3D - 35 113 IPR036879 GO:0003677|GO:0046983
Mepo1g04059 183 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Mepo1g04059 183 SUPERFAMILY SRF-like 18 86 IPR036879 GO:0003677|GO:0046983
Mepo1g04059 183 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04059 Mepo-Chr1 47160787 47161338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04059 16 165 Type I MADS-box Gene Family AT5G60440 29.032 4.26e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g04059 SRF-TF 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04059 - - psat:127076209 185.652