Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo1g04059 | ATGGCTTCTTCATACAGAAACAACACATCAACAAAAAGCAACAACAAACGTAAGAGAACCATTAAAATCAAGAAAGCAGAACAATCAAACAAGCCTCGTGATTCCTTCTCAAAACGCAAACTAGGACTCTTCAACAAAGTTACAGAACTATCTATTTTATGCAATGCAAAAACTGCATTGATCATCACTTCACCAAACGAAAAACTCTATGTTTGTGGTTACCCTAACCCCAACACCGTCATTAAACACTTTCTCGATAAGGAAAACCTAGTCATCGACGCTGAAAAAAGGAAGCAAGATGAGGGCATAGTTGAAACCTTAAGGCTTCAACATGAGGTAATAGAAGAACGGCTGAAAGAAGAGAGTGATTATTTAGAAGGTGTAAAAGAGACGAACAAGAGCAGTTCATGTTTTTCTTGCTGGTGGGGTCATTCTATTGATGATATGGCTTTGGAATCTCTTGAGGAATTTAAGACTGCTTTGGTAAAATTGAAGCTTAATTTAGATGCATCCTTGGAAGGAAAAAAGATTCATATAACTACTCAGTCTTGA | 552 | 0.3696 | MASSYRNNTSTKSNNKRKRTIKIKKAEQSNKPRDSFSKRKLGLFNKVTELSILCNAKTALIITSPNEKLYVCGYPNPNTVIKHFLDKENLVIDAEKRKQDEGIVETLRLQHEVIEERLKEESDYLEGVKETNKSSSCFSCWWGHSIDDMALESLEEFKTALVKLKLNLDASLEGKKIHITTQS | 183 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo1g04059 | 183 | CDD | MADS | 35 | 75 | - | - | |
Mepo1g04059 | 183 | ProSiteProfiles | MADS-box domain profile. | 16 | 76 | IPR002100 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | PANTHER | MADS BOX PROTEIN | 20 | 168 | - | - | |
Mepo1g04059 | 183 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 33 | 71 | IPR002100 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | PRINTS | MADS domain signature | 18 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | PRINTS | MADS domain signature | 38 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | PRINTS | MADS domain signature | 53 | 74 | IPR002100 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | Gene3D | - | 35 | 113 | IPR036879 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | SMART | madsneu2 | 16 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | SUPERFAMILY | SRF-like | 18 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Mepo1g04059 | 183 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo1g04059 | Mepo-Chr1 | 47160787 | 47161338 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo1g04059 | 16 | 165 | Type I MADS-box Gene Family | AT5G60440 | 29.032 | 4.26e-17 | 75.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Mepo1g04059 | SRF-TF | 1e-13 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo1g04059 | - | - | psat:127076209 | 185.652 |