Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04058 ATGTTGCAGTTTCAGCCACAAGGAACTTCTAAACAAACTTGTACTCTTCTTGCTGTTACCTCTGAAACACGTTCTGTTGAACAGAAGCAGTTACAGAATCAGCACAAGTATCCTTTCCCTGAGTTAGTTTCTTCGGGGCGTCTCGAGGTTCAAACTCTTTGCAATCCAGAAAAAGAACAGTTTCGTAAAGTTCTTGAATCGTGTAAGCCAAATTTTGTTTACTTTCAAGGAGAGCAGTTACTACATGAGGAAATTGGTTCACTGGTTTGGCAAGGTGTGGAGTTATCCAACCCTGAAGATATATCAGAGCTCTTCGATACCACATTACCGACGGCTGTTTATTTAGAAATCTCAAATGGAGAAAGTTTTGCAGAGGCCCTTCATCTTAAGGGAATCCCATATGTTGTATTTTGGAAAAATGCCTTTTCTAAATATGCTGCCTGCCATTTCCGTCAAGCATTATTTTCAGTGGTGCAGAGTTCATCTACACACACATGGGATGCTTTCCACCTTGCACATGCCTCTTTCAAACTTTACTGTGTTCAAAATAATCAAGTACTTCCTACTGATAGCAATGATGCTGATAGTGATATGGGGCCACACCTTCTTGGTGAGTGTCTCAAAGTCAATGTTGACCCTCCAGAGATGGATGAAGAAGATGATGATGAAGAAAGTTCCTCAGGCACTCTTCCTTCTATTCAGATACATGACGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCTCCTTCCACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATGCGTAGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCGCTCCAGGCAGCTTCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTATCTGGCAGTCCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTCGTGCACAACCCAACGATGAAGCAAACACACAGATTATCTCTGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAGTTAGCATGAAGCTTCCTCTATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCTTCTTTTGAGAAAGATGATGCGGAGCGCTTACTTTTCTTCTATCAAAGCTCTGAGAAAGATGGATGTGATAATGGCAATATAGTTTTCAGCAGGCCCCCCATTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGTGAATCAAGCCAAGGGGCTAGCCCTGACATCCACAATGATGAAGAGGAAAAGGATAGGAAAATGGTGAATGGGATTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGACGCCATAGAATGACACCTTTTAGTGGACCTTCTGGCGTAAATGGCTTTGGTGGTGCCCATGTTGAGGCTTATGTGCCACTTGTCCCTGTGAAGCGTAGTAGTATTGGATCATCATCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAGCCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGTAGCAGAGGCCCGGTACAGACTTGCTCTGAGGAGGAATTTATTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCCCAAGGTGGGCTTTCCGAGTTCCCTGATGCCATTCTGAATGGAAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAAATGGGAAATTACACATCAACAAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCTCATGATGATGTGGATGGAGAATGCTGCTTGCTGTGTCACAGTAGTGCTGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTGGAATACATATGTCCTCATTGTAGTGTTACGAATTTCAAGAAAAAACAAAGTGTTGCAAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACTCCTTTGA 2310 0.4299 MLQFQPQGTSKQTCTLLAVTSETRSVEQKQLQNQHKYPFPELVSSGRLEVQTLCNPEKEQFRKVLESCKPNFVYFQGEQLLHEEIGSLVWQGVELSNPEDISELFDTTLPTAVYLEISNGESFAEALHLKGIPYVVFWKNAFSKYAACHFRQALFSVVQSSSTHTWDAFHLAHASFKLYCVQNNQVLPTDSNDADSDMGPHLLGECLKVNVDPPEMDEEDDDEESSSGTLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEMRSCKLHGKYSAPPPPLQAASFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVRAQPNDEANTQIISEPRRSASIACGATIFEVSMKLPLWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCDNGNIVFSRPPIWLKPPPPTRKRCESSQGASPDIHNDEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSGVNGFGGAHVEAYVPLVPVKRSSIGSSSATQRKSFSSSSQPKQVISLNPLPLKKHGCSRGPVQTCSEEEFIKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRLL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04058 769 SMART ARID_2 580 683 - -
Mepo1g04058 769 MobiDBLite consensus disorder prediction 452 481 - -
Mepo1g04058 769 CDD PHD_ARID4_like 693 744 - -
Mepo1g04058 769 ProSiteProfiles ARID domain profile. 583 687 IPR001606 GO:0003677
Mepo1g04058 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 750 IPR013083 -
Mepo1g04058 769 CDD ARID 585 683 - -
Mepo1g04058 769 Gene3D - 580 686 IPR036431 GO:0003677
Mepo1g04058 769 MobiDBLite consensus disorder prediction 212 232 - -
Mepo1g04058 769 SUPERFAMILY FYVE/PHD zinc finger 679 747 IPR011011 -
Mepo1g04058 769 Pfam ARID/BRIGHT DNA binding domain 586 683 IPR001606 GO:0003677
Mepo1g04058 769 SUPERFAMILY ARID-like 583 698 IPR036431 GO:0003677
Mepo1g04058 769 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 IPR042293 -
Mepo1g04058 769 SMART bright_3 584 688 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04058 Mepo-Chr1 47147844 47157631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04058 4 758 ARID Transcription Factor Family AT3G43240 60.499 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo1g04058 ARID 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04058 - - gmx:100816540 1304.27