Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04056 ATGGGGCGTGCTAAGATTGAGATTAAGAAGATTGAAAACAAAACCACAAGGCAAGTGACATTTTCAAAAAGAAGAACTGGATTGTTGAAGAAGACTCGTGAGTTATCAGTGCTATGTGAAGCTCAAATTGGCTTCATCATTTTCTCAAGCACGGGAAAACTCTCTCAGTATTGTTCTGATTCCACCAGGACACGTGTTACACTCAAAAGAGATGGTGTGACGCGCTACTACTTATTTAGTAGTTCAACTCTTTCATCAATGTTATGGCCATAG 273 0.3956 MGRAKIEIKKIENKTTRQVTFSKRRTGLLKKTRELSVLCEAQIGFIIFSSTGKLSQYCSDSTRTRVTLKRDGVTRYYLFSSSTLSSMLWP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04056 90 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g04056 90 CDD MADS_MEF2_like 2 85 IPR033896 GO:0000977|GO:0045944
Mepo1g04056 90 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo1g04056 90 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Mepo1g04056 90 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Mepo1g04056 90 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 76 - -
Mepo1g04056 90 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g04056 90 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g04056 90 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g04056 90 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04056 Mepo-Chr1 47136077 47136652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04056 1 70 MADS-box Gene Family AT5G23260 70.000 1.85e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g04056 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04056 - - twl:119989736 103.219