Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04047 ATGGATACTATGAAATCCTTCAAAGGTTATGGCAAAGTGGACGAAATAGAACAACAAGCATTCCAAAAAAAGACACGTAAACGCATCACAATCATAATCATCTCCTCCATCATTCTAGTTGCAGTGATCATAGCTGCAGTTGCAGGAATCCTCATACACAAGCACAACACCGAATCCTCTTCCTCACCAAACTCACTCCCCAACACCGAGTTAACACCCGCCACCTCACTCAAAGCAGTTTGTGAGTCAACTCAGTACCCTAACTCCTGCTTCTCTTCCATCTCTTCTCTTCCTGATTCCAACACTACTGACCCTGAACAACTCTTCAAACTCTCACTCAAAGTCGCCATTGATGAACTCTCCAAGCTTTCTCTCACGCGCTTCAGTGAAAAAGTCACTGACTCGCGTGTTAAGAAAGCTATTGGAGTTTGTGATAATGTTCTTAAGGATTCATTGGATCGTTTGAATGATTCAATGTCCACGATTGTTGATGGTGGAAAGATGCTTTCTCCGGCCAAGATTCGTGATGTGGAGACGTGGCTGAGTGCGGCGTTAACGGATCATGATACTTGTTTGGATGCTGTTGGTGAAGTTAACTCCACGGCGGCGCGTGGTGTTATACCGGAAATAGAGAGGATCATGAGAAACTCTACGGAGTTTGCAAGTAATAGTTTGGCCATTGTCACCAAGGTGATCAGATTGCTGTCAAATTTTGAAGTTTCAAATCATCACCGCAGGTTGCTTGGAGAGTTCCCGGAGTGGTTGGGAACGGCGGAGAGGAGGCTGCTTGCGACGGAGGTGAATGACACTGTGCCGAATGCGGTGGTGGCAAAGGATGGAAGTGGACAGTATACAACAATAGGGGAGGCGTTGAAGTTGGTGAAGAAGAAGAGTCTGCAGAGATTTGTGGTGTATGTGAAGAAAGGGGTGTATGTAGAGAATATTGATTTAGATAAGAATACATGGAATGTGATGATTTATGGTGATGGTATGACGGAAACCATCGTATCCGGTGGCCGGAATTTCATAGACGGCACACCTACCTTTGAAACCGCTACTTTCGCTGTTAAAGGCAAGGGATTCATTGCCAAAGACATTCAATTCTTGAACACTGCTGGTGCATCTAAGCACCAAGCTGTGGCAATGCGATCCGGCTCAGATCAATCCGTGTTCTATAAGTGTTCATTTGTTGGATATCAGGATACTCTTTATGCACATTCAAATCGTCAATTCTACCGCGACTGTGACATTACAGGCACCATAGATTTCATATTCGGAAATGCTGCTGCTGTGTTCCAAAATTGCAAAATCATGCCTAGACAGCCTCTACCAAACCAGTTCAACACAATAACAGCTCAGGGTAAAAAGGATCCTAATCAAAACTCTGGAATTGTGATCCAGAAATCAACTATCACTACATTACCTGGTGACAATCTCAATGCACGTACTTACCTTGGTAGGCCATGGAAAGATTTCTCCACCACTATTATCATGAAATCAGAAATTTTCTCATTATTGGAATCAGTAGGGTGGATAAGTTGGGTTGCTAATGTGGAACCTCCAAGTAGCATCGTCTATGCTGAATATCAGAACACTGGGCCAGGAGCAAATGTAGCCGGGAGAGTCAAATGGGCCAGTTATAAGCCCGCTCTCGGAGACGACGATGCTGTCAAATTCACTGTGGAGTCCTTTATCCAAGGTCCAGAGTGGTTGCCAAGTGCTTCTGTGCAGTTTGATTCTACCATTTGA 1749 0.4448 MDTMKSFKGYGKVDEIEQQAFQKKTRKRITIIIISSIILVAVIIAAVAGILIHKHNTESSSSPNSLPNTELTPATSLKAVCESTQYPNSCFSSISSLPDSNTTDPEQLFKLSLKVAIDELSKLSLTRFSEKVTDSRVKKAIGVCDNVLKDSLDRLNDSMSTIVDGGKMLSPAKIRDVETWLSAALTDHDTCLDAVGEVNSTAARGVIPEIERIMRNSTEFASNSLAIVTKVIRLLSNFEVSNHHRRLLGEFPEWLGTAERRLLATEVNDTVPNAVVAKDGSGQYTTIGEALKLVKKKSLQRFVVYVKKGVYVENIDLDKNTWNVMIYGDGMTETIVSGGRNFIDGTPTFETATFAVKGKGFIAKDIQFLNTAGASKHQAVAMRSGSDQSVFYKCSFVGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAAVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNSGIVIQKSTITTLPGDNLNARTYLGRPWKDFSTTIIMKSEIFSLLESVGWISWVANVEPPSSIVYAEYQNTGPGANVAGRVKWASYKPALGDDDAVKFTVESFIQGPEWLPSASVQFDSTI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04047 582 SUPERFAMILY Pectin lyase-like 273 579 IPR011050 -
Mepo1g04047 582 FunFam Pectinesterase 267 582 - -
Mepo1g04047 582 PANTHER PECTINESTERASE 33 572 - -
Mepo1g04047 582 Pfam Pectinesterase 273 567 IPR000070 GO:0030599|GO:0042545
Mepo1g04047 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Mepo1g04047 582 ProSitePatterns Pectinesterase signature 1. 298 317 IPR018040 -
Mepo1g04047 582 CDD PMEI-like_3 79 230 - -
Mepo1g04047 582 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Mepo1g04047 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Mepo1g04047 582 SMART PMEI_2 72 227 IPR006501 GO:0004857
Mepo1g04047 582 Pfam Plant invertase/pectin methylesterase inhibitor 77 227 IPR006501 GO:0004857
Mepo1g04047 582 FunFam Pectinesterase 73 232 - -
Mepo1g04047 582 Gene3D - 267 582 IPR012334 -
Mepo1g04047 582 NCBIfam pectinesterase inhibitor domain 68 230 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04047 Mepo-Chr1 47035198 47039130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04047 1 576 Carbohydrate Esterase AT1G53840 56.926 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04047 - - pvu:PHAVU_010G123100g 843.188