Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04041 ATGGGTGCAATTGCAGCTGCAACTGCAACAAAAGGGTCAGGTGATGTATTAGGTGATTCTAATACAATTGAAATAACCGGAAAAATCATGGTTTTAGCAATAATTTTTCTATTCATGGTTGTTATGTTTGTTCTAATGCTTCATTTATATGCAAAGTGGTTTTGGTGGCGTTTTGAGGAAAGAACTGTTCCTCAGCCAAGAAACCGCCGTCGTCGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTGTATGGAAGTCACCAAATTGGACTTGAAGCAAAAATTCTTAAGTCTTTGCCTGTTTTGGTTTTCAAAAATGAGGATTTCAAAGATGGTTTGGAATGTGCTGTTTGTCTTTGTGATGTTGTTGAAGGAGAAAAAACTAGGCTTTTACCAAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTGTTGAATCATGTAGACAAAATAGTACTGCTTCAAATGGTGAAGAGATGAATGGGTTAGTCTCATCAGAAGGTGAAAATTTGAGTCATGTGAATGGTTTAGAGTCTTCAAATTTTCCTACAAATGTTTTGGTTTGGGGGAATTCTCAAACACAAGTTAGTTCTTCTTTTGGTGTTTCTTTGGAAGAAGGAAGTTCTCAGCAACAACCTAGTTCAACATCATCGTCATCATCATCAACTTTAGGTAGTGATAATGTTAATAGTAGTAGATGTAATGGAAATGGAATGTTGGTGATTGATATACCATTGCCAAGTGAGTTTAGTTCTTCCTCATTGTCACCTTCTGATAATAGGTGTGTTGAAGATGAAATGAAATCACCAATGGCAACAAGATTGAGGTCATTTAAGAGGCTTTTAAGTAGGGACAAAAAGTTAAGTCCTTCAACTCCAAGTTCTATGGATGTGGAACAAGGCCAGAGCTAG 969 0.3684 MGAIAAATATKGSGDVLGDSNTIEITGKIMVLAIIFLFMVVMFVLMLHLYAKWFWWRFEERTVPQPRNRRRRRRFVFAPGQDPVVYGSHQIGLEAKILKSLPVLVFKNEDFKDGLECAVCLCDVVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVESCRQNSTASNGEEMNGLVSSEGENLSHVNGLESSNFPTNVLVWGNSQTQVSSSFGVSLEEGSSQQQPSSTSSSSSSTLGSDNVNSSRCNGNGMLVIDIPLPSEFSSSSLSPSDNRCVEDEMKSPMATRLRSFKRLLSRDKKLSPSTPSSMDVEQGQS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04041 322 CDD RING-H2_EL5-like 116 159 - -
Mepo1g04041 322 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Mepo1g04041 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 246 - -
Mepo1g04041 322 MobiDBLite consensus disorder prediction 267 322 - -
Mepo1g04041 322 FunFam RING-H2 finger protein ATL3 85 164 - -
Mepo1g04041 322 MobiDBLite consensus disorder prediction 280 305 - -
Mepo1g04041 322 MobiDBLite consensus disorder prediction 219 251 - -
Mepo1g04041 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 163 IPR013083 -
Mepo1g04041 322 SMART ring_2 117 158 IPR001841 -
Mepo1g04041 322 Pfam Ring finger domain 116 159 IPR001841 -
Mepo1g04041 322 SUPERFAMILY RING/U-box 97 164 - -
Mepo1g04041 322 MobiDBLite consensus disorder prediction 306 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04041 Mepo-Chr1 46976672 46978226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04041 24 305 C3H Transcription Factor Family AT1G53820 45.724 1.97e-68 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04041 - - cam:101491184 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04041 1 46976672 46978226 Mepo1g04041 1 46976672 46978226 ECH