Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04038 ATGAAAACAACAACCATTCTTGAATTCCTCACAATAATTGCTTTTATGGCTAACTCATTTCAAGAAAACATATCCAAGATTCTTCATAAACTCTACAAGAATCATGGTTCAGTGAAGGAAATAGATCAAGGTGAAAGTGATTGTTGTTCAGTTTGTTTAAGCCAAATGTGTAAAGGAGATAAAGTTAGGGTATTGCCTTTATGTAATCATAGGTATCATGCTGATTGTATTGGTGTTTGGTTGAAGAACAATACTACATGTCCACTTTGTAGAAGCAAAATCAGTAACCATATTAATCAGAATCAACAAAAACAGGTGAAACCCTTTCAAGAATCTTTGGTTGACCTTATACAAAGTTTCTCTGATGTACTTGTAGCTATTCTTTATATGATTCTGCCATCTAGTATCACTGAATCTTTCCCTGTAGTTTATTGA 435 0.3287 MKTTTILEFLTIIAFMANSFQENISKILHKLYKNHGSVKEIDQGESDCCSVCLSQMCKGDKVRVLPLCNHRYHADCIGVWLKNNTTCPLCRSKISNHINQNQQKQVKPFQESLVDLIQSFSDVLVAILYMILPSSITESFPVVY 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04038 144 PANTHER RING-H2 FINGER PROTEIN ATL16 32 108 IPR044600 GO:0016567|GO:0016740
Mepo1g04038 144 ProSiteProfiles Zinc finger RING-type profile. 49 91 IPR001841 -
Mepo1g04038 144 SMART ring_2 49 90 IPR001841 -
Mepo1g04038 144 Pfam Ring finger domain 48 91 IPR001841 -
Mepo1g04038 144 SUPERFAMILY RING/U-box 38 99 - -
Mepo1g04038 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 98 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04038 Mepo-Chr1 46933114 46933952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04038 49 95 C3H Transcription Factor Family AT1G53820 55.319 1.41e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04038 - - tpra:123883175 246.514